View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_36 (Length: 335)
Name: NF17991_low_36
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 5875780 - 5875463
Alignment:
| Q |
18 |
atacgcagttcgcatcaatgcatttatatgtgaggcccatcgccagcggaggagtaagaattttacaattggatttagggacttcattatactaagtcaa |
117 |
Q |
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| T |
5875780 |
atacgcagttcgcatcaatgcatttatatgtgaggcccatcgccagcggaggagtaagaatttgacaattggatttagggacttcattatactaagtcaa |
5875681 |
T |
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| Q |
118 |
attttcagataacattcatacctaattannnnnnngaaagaaatgttcgcacctaaatgtttttgtaaaaactaaattatacttaaatgaatctcgcttg |
217 |
Q |
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| T |
5875680 |
attttcagataacattcatacctaattatttttttgaaagaaatgttcgcccctacatgtttttgtaaaaactaaattatacttaaatgaacctcgcttg |
5875581 |
T |
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| Q |
218 |
ttgtaatgtccccactcaacacaagtat-nnnnnnnncactttttaaatcaaatgaaaatggctttttaaatcggtcatgtatcgcctactcgggtttcg |
316 |
Q |
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| T |
5875580 |
ttgtaatgtccccactcaacacaagtataaaaaaaaacactttttaaatcatatgaaaatggctttttaaatcggtcatgtatcgtctactcggatttgg |
5875481 |
T |
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| Q |
317 |
aggattaaatcgcggaat |
334 |
Q |
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| T |
5875480 |
aggattaaatcgcggaat |
5875463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 18111195 - 18111233
Alignment:
| Q |
254 |
cactttttaaatcaaatgaaaatggctttttaaatcggt |
292 |
Q |
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| T |
18111195 |
cactttttaaatcagatgaaaatgactttttaaatcggt |
18111233 |
T |
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