View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_38 (Length: 330)
Name: NF17991_low_38
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_38 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 34820833 - 34821162
Alignment:
| Q |
1 |
tcgtcaacaaaactactattatttccagcttcatctaacttgtcgtttgttataggcaacttgtttgaagaaattatgttcagcatttgaagaatatcat |
100 |
Q |
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| T |
34820833 |
tcgtcaacaaaactactattatttccagcttcatctaacttgtcgtttgttataggcaacttgtttgaagaaattatgttcagcatttgaagaatatcat |
34820932 |
T |
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| Q |
101 |
tgggccgtcgtttaccgttatcaactttgttccatgcataatcaaatgtctcgagcatttgagattttactttacaagcttcaccatcggtcttcatctg |
200 |
Q |
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| T |
34820933 |
tgggccgtcgtttaccgttatcaactttgttccatgcataatcaaatgtctcgagcatttgagattttactttacaagcttcaccatcggtcttcatctg |
34821032 |
T |
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| Q |
201 |
ttcaacaaatagtattgcgcaaataaatcattgaaattaaaaatatttgcaaatcatttgtttaagataaaattttacttgtcttccctaaatgcaagac |
300 |
Q |
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| T |
34821033 |
ttcaacaaatggtattgcgcaaataaatcattgaaattaaaaatatttgcaaatcatttgtttaagataaaattttacttgtcttccctaaatgcaagac |
34821132 |
T |
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| Q |
301 |
ttgatatcaattaattgtgtaaattatttc |
330 |
Q |
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| T |
34821133 |
ttgatatcaattaattgtgtaaattatttc |
34821162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34820716 - 34820761
Alignment:
| Q |
1 |
tcgtcaacaaaactactattatttccagcttcatctaacttgtcgt |
46 |
Q |
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| T |
34820716 |
tcgtcaacaaaactactattattttcagcttcatctaatttgtcgt |
34820761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34820599 - 34820642
Alignment:
| Q |
1 |
tcgtcaacaaaactactattatttccagcttcatctaacttgtc |
44 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
34820599 |
tcgtcaacaaaactactattatttttagcttcatctaagttgtc |
34820642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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