View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_4 (Length: 521)
Name: NF17991_low_4
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_4 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 192 - 521
Target Start/End: Complemental strand, 14020712 - 14020381
Alignment:
| Q |
192 |
gttctgttccagctagttctccatctgaacggcctcctaaaagaacacttaattcagttctcatatcaccgaccacacaatcagaacggcctccttgtga |
291 |
Q |
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| T |
14020712 |
gttctgttccagctagttctccatc--atccgtaacctaaaagaacacttagttcatttctcatatcaccgaccacacgatcagaacggcctctttgaga |
14020615 |
T |
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| Q |
292 |
tcagtcagagccnnnnnnnnttatttgtctaacggaatttcagcacatgaccggtggaattaa----aatgtatttatgttcacatttcaaccccaaaga |
387 |
Q |
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| T |
14020614 |
tcaatcagagctcaaaaaatgtatttgtctaacggaatttcagcacatgaccggtggaattaattaaaatgtatttatgttcacatttcaaccccaaaga |
14020515 |
T |
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| Q |
388 |
acacttgtctaagggatcatcttacacatacaacaaaaattaatttatgtttctttcaccaaaaagcctaagatagttagtatttgataattgacaatac |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14020514 |
acacttgtctaagggatcatcttacacatacaacaaaaattaatttatgtttctttcaccaaaaagcctaagatagttagtatttgataattgacaatac |
14020415 |
T |
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| Q |
488 |
tgatagagttacagcagagaaatacgagaatgat |
521 |
Q |
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| T |
14020414 |
tgatagagttacagcagagaaatacgagaatgat |
14020381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 385 - 506
Target Start/End: Original strand, 13475593 - 13475714
Alignment:
| Q |
385 |
agaacacttgtctaagggatcatcttacacatacaacaaaaattaatttatgtttctttcaccaaaaagcctaagatagttagtatttgataattgacaa |
484 |
Q |
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| T |
13475593 |
agaacacttgtctaagggatcatcttacacatacaacaaaaagttatatatgtttctttcacctaaaagcttaagatagttagtttataacaattgacaa |
13475692 |
T |
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| Q |
485 |
tactgatagagttacagcagag |
506 |
Q |
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| T |
13475693 |
tactgatagagttacagcagag |
13475714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 313 - 378
Target Start/End: Complemental strand, 14044848 - 14044783
Alignment:
| Q |
313 |
tatttgtctaacggaatttcagcacatgaccggtggaattaaaatgtatttatgttcacatttcaa |
378 |
Q |
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| T |
14044848 |
tatttgtctaacgaaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaa |
14044783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 14044903 - 14044867
Alignment:
| Q |
180 |
tttctccattcagttctgttccagctagttctccatc |
216 |
Q |
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| T |
14044903 |
tttctccattcagttatgttccagctagttctccatc |
14044867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 14013156 - 14013117
Alignment:
| Q |
315 |
tttgtctaacggaatttcagcacatgaccggtggaattaa |
354 |
Q |
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| T |
14013156 |
tttgtctaactgaatttcagcacatgacaggtggaattaa |
14013117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 356
Target Start/End: Original strand, 10507769 - 10507812
Alignment:
| Q |
313 |
tatttgtctaacggaatttcagcacatgaccggtggaattaaaa |
356 |
Q |
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| T |
10507769 |
tatttgtctatctgaatttcagcacatgacaggtggaattaaaa |
10507812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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