View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_40 (Length: 329)
Name: NF17991_low_40
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 23 - 316
Target Start/End: Complemental strand, 39027972 - 39027679
Alignment:
| Q |
23 |
atgctttacactttagttgttataaattaatatttgagcttagtatcatcgaccgtaactaatatttttctttgacgggattgtaactaataaccatcta |
122 |
Q |
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| T |
39027972 |
atgctttacactctagttgttataaattaatatttgagcttagtatcatcgaccgtaactaatatttttctttgacgggattgtaactaataaccatcta |
39027873 |
T |
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| Q |
123 |
ttttttaatgtactttttctaaatcttttgcagttggtggctcgttggtgtgtctaagttttggctgctaagaaatatgatataacgagctacaaagtag |
222 |
Q |
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| T |
39027872 |
ttttttaatgtgctttttctaaatcttttgcagttggtggctcgttggtgtgtctaagttttggctgctaagaaatatgatataacgagctacaaagtag |
39027773 |
T |
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| Q |
223 |
ctaacttatattatttcgtaatgagctagggtaccacttaaacactctcacttatttgtattttcttatctaaaatataatataagataataat |
316 |
Q |
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| T |
39027772 |
ctaacttatattatttcgtaatgagctagggtaccacttaaacactctcacttatttgtatttccttatctaaaatataatataagataataat |
39027679 |
T |
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Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 14939675 - 14939761
Alignment:
| Q |
8 |
agattattctt-agccatgctttacactttagttgttataaattaatatttgagcttagtatcatcgaccgtaactaatatttttct |
93 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14939675 |
agattattctttagccatgctttacactttagttgttataaattagtatttgagcttggtatcatcgaccgtaactaatatttttct |
14939761 |
T |
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