View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_41 (Length: 327)
Name: NF17991_low_41
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_41 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 12 - 327
Target Start/End: Original strand, 48115681 - 48116009
Alignment:
| Q |
12 |
tatatgttggtaaatttcaattcatgttcagnnnnnnnattaattaacaaacttaatcaacctgaaagcattcatgttgtctgatttagtattattcgat |
111 |
Q |
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| T |
48115681 |
tatatgttggtaaatttcaattcatgttcagtttttt-attaattaacaaacttaatcaacgtgaaagcattcatgttgtctgatttagtattattcgat |
48115779 |
T |
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| Q |
112 |
cagttgtcacatgaacaaataattactaaccattctttcattctcttttggcac-nnnnnnnnnnnctttctaaaactttattttgcctatcaagtggaa |
210 |
Q |
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| T |
48115780 |
cagttgtcacatgaacaaataattactaaccattctttcattctcttttggcacttttttttttttctttctaaaactttattttgcctatcaagtggaa |
48115879 |
T |
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| Q |
211 |
gcaatggcaatgaatgcatgtaataattagctag-------------aatgcattcattttcaacgaaacgtattaaagtggttatatagcatttcattt |
297 |
Q |
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| T |
48115880 |
gcaatggcaatgaatgcatgtaataattagctagaaattgaaagtgcaatgcattcgttttcaacgaaacgtattaaagtggttatatagcatttcattt |
48115979 |
T |
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| Q |
298 |
tgaagaaaaataagaaagtaggtgctagta |
327 |
Q |
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| T |
48115980 |
tgaagaaaaataagaaagtaggtgctagta |
48116009 |
T |
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