View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_42 (Length: 324)
Name: NF17991_low_42
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 311
Target Start/End: Original strand, 48636066 - 48636334
Alignment:
| Q |
22 |
gtggcaacactcatcatttgtaatctaatttatactctcggattcgatagattatccatcgctccaacgcgccacaattggcgcgtgttctgtaaagcta |
121 |
Q |
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| T |
48636066 |
gtggcaacactcatcatttgtaatctaatttatactatcgggttcgatagattatccatcgctccaacgcgccacaattggcgcgtgttctgtaaagcta |
48636165 |
T |
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| Q |
122 |
ctaactgtttactgttaggttgttgttatcgttattttccctgatcattatcgttttgcttgctcagatctatattttactttggggttacgtttggatg |
221 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48636166 |
ctaactgtttactgttaggtggttgt----------------------tatcgttttgcttgctcagatctatattttactttggggttacgtttggatg |
48636243 |
T |
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| Q |
222 |
ttctgataggaaa-gaaggaaaaatgtcttcaaatgaaaagtttaatttttcgtgttaaaaccaaatttgttttagatgttggtaaaaatt |
311 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48636244 |
ttctgataggaaaagaaggaaaaatgtcttcaaatgaaaagtttaatttttcgtgttaaaaccaaatttgttttagatgttggtaaaaatt |
48636334 |
T |
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