View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_45 (Length: 318)
Name: NF17991_low_45
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 23 - 307
Target Start/End: Original strand, 1702337 - 1702622
Alignment:
| Q |
23 |
tgtgctacccatggcttcgaccatactctcaaaataagttatccaatcgaagcatgccatgtgttttctttggctattctacacaacatcatgcctacca |
122 |
Q |
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| T |
1702337 |
tgtgctacccatggcttcgaccatactctcaaaataagttatccaatcgaagcatgccatgtgttttctttggctactctacacaacatcatgcctacca |
1702436 |
T |
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| Q |
123 |
atgttatcacccacccactcaaaagttgtatctctcaagacacgtcacctttcatgagtcactcttt-caattttattgaatctttatgcctcgtccacg |
221 |
Q |
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| T |
1702437 |
atgttatcacccacccactcaaaagttgtatctctcaagacacgtcacctttcatgagtcactctttccatttttattgaatctttatgcctcgtccacg |
1702536 |
T |
|
| Q |
222 |
tcttctattttaaattcaaactcaaacactaacaagcactttccttctcatcatcctcttattattcaacaccttagccatcctat |
307 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1702537 |
tcttctattttaaattcaaactcaaacactagcaaacactttccttctcatcatcctcttattattcaacaccttaaccatcctat |
1702622 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 26592018 - 26591960
Alignment:
| Q |
106 |
caacatcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagaca |
164 |
Q |
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|||||||||||||||||||| || || || ||||||||||| || |||||||| ||||| |
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| T |
26592018 |
caacatcatgcctaccaatgctaccatcctcccactcaaaaattatatctctccagaca |
26591960 |
T |
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