View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_5 (Length: 489)
Name: NF17991_low_5
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 10 - 484
Target Start/End: Complemental strand, 41830624 - 41830147
Alignment:
| Q |
10 |
tcatcatcaacatctccatcaccatcaatattgcaaaacacaattttcaataccatgaatattgacacgttgcctatgatggatcatagtggatacttca |
109 |
Q |
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| T |
41830624 |
tcatcatcaacatctccatcaccatcaatattgcaaaacacaattttcaataccatgaatattgacacgttgcctgtgatggatcatagtggatacttca |
41830525 |
T |
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| Q |
110 |
acaatacagttactacaatgccatgcttttcgtcacaaaatcatgaagttgaaattaaaggttcttatttagaaaatggtgtgtttgggagtgtaaatat |
209 |
Q |
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| T |
41830524 |
acaatacagttactacaatgccatgcttttcgtcacaaaatcacgaagttgaaattaaaggttcttatttagaaaatggtgtgtttgggagtgtaaatat |
41830425 |
T |
|
| Q |
210 |
tggagtagaaggggatatggagaataagtgcaacatagaaactaaccctaaccattctgattattattttgatgacataaagataaacaatatgcttagt |
309 |
Q |
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| T |
41830424 |
tggagtagaaggggatatggagaataagtgcaacatagaaactaaccctaaccattctgattattattttgatgacataaagataaacaatatgcttagt |
41830325 |
T |
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| Q |
310 |
aactgcaatattattgaaagcaataataatgaaattgaaagtaggggt---gtagtggagaatttatttcaagaacaattcaacttgggagaatgggatt |
406 |
Q |
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| T |
41830324 |
aactgcaatattattgaaagcaataataataaaattgaaagtaggggtgaagtagtggagaatttatttcaagaacaattcaacttgggagaatgggatt |
41830225 |
T |
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| Q |
407 |
ttgaggagttgatgaaagatgtttcctcctttttattttcttgatttttcattctgatccaataatatctgtgctcct |
484 |
Q |
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| T |
41830224 |
ttgaggagttgatgaaagatgtttcctcctttttattttcttgatttttcattctgatccaataatatttgtgttcct |
41830147 |
T |
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