View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_50 (Length: 301)
Name: NF17991_low_50
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 47016231 - 47015942
Alignment:
| Q |
1 |
actcgcagcaatatcacgaacacgtaattgagaatctagaatctgacacagtaatacttaccatgtttttggccaagaattaatttgattggttaactat |
100 |
Q |
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| T |
47016231 |
actcgcagcaatatcacgaacacgtaattgagaatctagaatctgacacagtaatacttaccatgtttttggccaagaattaatttgattggttaactat |
47016132 |
T |
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| Q |
101 |
aattcatgagctttttgtgaagaaacatttcgtggtaaatagcaccaaagaaagattctcaatgtcaacaatactccatatgatatttgtcaaaactcca |
200 |
Q |
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| T |
47016131 |
aattcatgagctttttgtgaagaaacatttcgtggtaaatagcaccaaagaaagattctcaatgtcaacaatactccatatgatatttgtcaaaactcca |
47016032 |
T |
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| Q |
201 |
attgaatcatttgttgacgagaaatgctattctttacaaagaaaatctgtccataaaatgcaagaatgtaaacgtggaatctgttccttt |
290 |
Q |
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| T |
47016031 |
attgaatcatttgttgacgagaaatgctattctttacaaagaaaatctgtccataaaatgcaagaatgtaaacgtggaatctgttccttt |
47015942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 47016276 - 47016237
Alignment:
| Q |
1 |
actcgcagcaatatcacgaacacgtaattgagaatctaga |
40 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
47016276 |
actcgcagatatatcacgaacacgtaattgagaatctaga |
47016237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 47016321 - 47016282
Alignment:
| Q |
1 |
actcgcagcaatatcacgaacacgtaattgagaatctaga |
40 |
Q |
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||||||||||||| ||||| |||||||||||||||||||| |
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| T |
47016321 |
actcgcagcaataccacgagcacgtaattgagaatctaga |
47016282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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