View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_55 (Length: 277)
Name: NF17991_low_55
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 39610318 - 39610582
Alignment:
| Q |
1 |
tccaggaaacaggagagggaaaagatgagaaaattgaagtattatcttgagctggaagaggagagaaaacaaaaactgctcaaagaaggagaagctcgga |
100 |
Q |
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| T |
39610318 |
tccaggaaacaggagagggaaaaaatgagaaaattgaagtattatcttgagctggaagaggagagaaaacaaaaactgctcaaagaagaagaagctcgga |
39610417 |
T |
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| Q |
101 |
agcgtcaaggtattcattattgatttcttttcctgcaacgtataaaagcctaagtttgta-nnnnnnnnncctgcagatcttgtagtattgaaaggatta |
199 |
Q |
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| T |
39610418 |
agcgtcaaggtattcattattgatttcttttcctgcaacgtataaaagcctaagtttgtattttttttttccttcagatcttgtagtattgaaaggatta |
39610517 |
T |
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| Q |
200 |
cactgaacttgttgctatgtggaatcagtactgtaccatcttttacataatttagttgacatgtg |
264 |
Q |
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| T |
39610518 |
cactgaacttgttgctatgtggaatcagtactgtaccatcttttacacaatttagttaacatgtg |
39610582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 40159389 - 40159258
Alignment:
| Q |
1 |
tccaggaaacaggagagggaaaagatgagaaaattgaagtattatcttgagctggaagaggagagaaaacaaaaactgctcaaagaaggagaagctcgga |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||| |||| || ||| ||| ||| | || | |||||||||| |
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| T |
40159389 |
tccaggaaacaggagagggaaaaaatgagaaaattgaagtattatcttaaggtggaagaagagaaaagacagaaattgcgtgaggaggaagaagctcggg |
40159290 |
T |
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| Q |
101 |
agcgtcaaggtattcattattgatttcttttc |
132 |
Q |
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| T |
40159289 |
agcgtgaaggtaattgttattgatttgttttc |
40159258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 33945574 - 33945429
Alignment:
| Q |
1 |
tccaggaaacaggagagggaaaagatgagaaaattgaagtattatcttgagctggaagaggagagaaaacaaaaactgctcaaagaaggagaagctcgga |
100 |
Q |
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||||||||||||||||||||||| ||||| || |||||| |||||||| | ||||||| ||||| | |||||| || | || | ||||||||||| |
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| T |
33945574 |
tccaggaaacaggagagggaaaaaatgaggaagttgaagcattatcttcggttggaagaacagagacagcaaaaattgaatgaggaggaagaagctcgga |
33945475 |
T |
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| Q |
101 |
agcgtcaaggtattcattattgatttcttttcctgcaacgtataaa |
146 |
Q |
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||| | |||||| ||||| || |||| ||| |||| ||| |||||| |
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| T |
33945474 |
agcatgaaggtaatcatttttaatttgtttgcctggaacatataaa |
33945429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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