View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_59 (Length: 250)
Name: NF17991_low_59
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 23329656 - 23329436
Alignment:
| Q |
22 |
tacacgtataattatcatttctcttaccgtgtttgatgtgttgacaattcgacacaaaaatgtgatgttgaagatgtgaaaa-ttcttgaattgaaaaac |
120 |
Q |
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| T |
23329656 |
tacacgtataattatcatttctcttaccgtgtttgatgtgttgacaattcgacacaaaaatgtgatgttgaagatgagaaaaattcttgaattgaaaaac |
23329557 |
T |
|
| Q |
121 |
aagtggacgagagtcaacttcaagtagagtagacgcagtcaatattaaagaggggtatggtggaatattctccgttaccgttgtcctagttgtggacatt |
220 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23329556 |
aagtggacgagagtcaatttcaagtagagtagacgcagtcaatattaaagaggggtatggtggaatattctccgttaccgttgtcctagttgtggacatt |
23329457 |
T |
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| Q |
221 |
atttttacctttcatattctt |
241 |
Q |
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|||| |||||||||| ||||| |
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| T |
23329456 |
atttgtacctttcattttctt |
23329436 |
T |
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