View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_6 (Length: 485)
Name: NF17991_low_6
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 1903302 - 1903057
Alignment:
| Q |
19 |
acaaaattataaataagataagaaatggatgaaaacataatccaatatgaaaaggaatgagatttttgcattactcactaacaatgttcctaaaactcca |
118 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1903302 |
acaaaaatataaataagataagaaatggatgaaaacataatccaatatgaaaaggaatgagatttttgcattactcactcacaatgttcctaaaactcca |
1903203 |
T |
|
| Q |
119 |
actaagtaaaaactagctatcatgctctccaatgaaatggatgatgagtagaatatgggttctgagatcttaagtggctgctaaccctagttggaaacgg |
218 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1903202 |
actaagtaagaactagctatcatgctctccaatgaaatggatgatgagtagaatatgggttctgagatcttaagtggctgctaaccctagttggaaacga |
1903103 |
T |
|
| Q |
219 |
ccgcttaaattggatgacaaatttcagacccttgtcacaacattgt |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1903102 |
ccgcttaaattggatgacaaatttcagacccttgtcacaacattgt |
1903057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 260 - 470
Target Start/End: Complemental strand, 1886731 - 1886519
Alignment:
| Q |
260 |
attgtcgttgtccttttata--gtacaagtcttgtctctatccaagttatgcccctgtcacatttggagcaaaaaattcattatttttcatcatactgac |
357 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1886731 |
attgtcgttgtccttttatatagtacaagtcttgtctctatccaagttatgcccctgtcacatttggagcaaaaaattccttatttttcatcatactgac |
1886632 |
T |
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| Q |
358 |
aatcattggtgacccaactacctgtgcttgcaatcctacaacgatgttgtttatacctccagggctgcatctttgtacaactttgcaacaaacacacaac |
457 |
Q |
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| T |
1886631 |
aatcattggtgacccaactacctgtacttgcaatcctacaacgatgttgtttatacctccagggctgcatctttgtacaactttgcaacaaacaaacaac |
1886532 |
T |
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| Q |
458 |
caacccataaaac |
470 |
Q |
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||||||||||||| |
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| T |
1886531 |
caacccataaaac |
1886519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 1879526 - 1879243
Alignment:
| Q |
19 |
acaaaattataaataagataagaaatggatgaaaacataatccaatatgaaaaggaatgagattttt-gcattactcactaacaatgttcctaaaactcc |
117 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||| |||||||||||| |||| ||||||||||| || |
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| T |
1879526 |
acaaaaatataaataagataagaaatggaagaaaacacaat-------gaaaaagaatgagattttttgcattactcactcacaaggttcctaaaacccc |
1879434 |
T |
|
| Q |
118 |
aactaagtaaaaactagctatcatgctctccaatgaaatggatgatgagtagaatatgggttctgagatcttaagtggctgctaaccctagttggaaacg |
217 |
Q |
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|||||||||| | | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1879433 |
aactaagtaagagcgagctatcatgctctccaatgaaatgaatgatgagtagaatatgggttctgagatcttaagtggctgctaaccctagttggaaacc |
1879334 |
T |
|
| Q |
218 |
gccgcttaaattggatgacaaatttcagacccttgtcacaacattgtcgttgtccttttatagtacaagtcttgtctctatccaagttatg |
308 |
Q |
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| T |
1879333 |
gccgcttaaacaagatgacaaatttcagacacttgtcagaacattgtcatcgtccttttatattacaagtcttgtctctatccaaattatg |
1879243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 387 - 470
Target Start/End: Complemental strand, 1877891 - 1877808
Alignment:
| Q |
387 |
gcaatcctacaacgatgttgtttatacctccagggctgcatctttgtacaactttgcaacaaacacacaaccaacccataaaac |
470 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1877891 |
gcaatcttacaacgatgttgtttatgcctccggggctgcatctttgtacaactttgcaacaaacacacaaccaacccataaaac |
1877808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 1879206 - 1879148
Alignment:
| Q |
317 |
acatttggagcaaaaaattcattatttttcatcatactgacaatcattggtgacccaac |
375 |
Q |
| |
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||||||||| ||||||||| ||||||||||| ||| ||||||||| ||||||||||| |
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| T |
1879206 |
acatttggaataaaaaattccttatttttcattgtaccgacaatcatcggtgacccaac |
1879148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 14186565 - 14186497
Alignment:
| Q |
65 |
atgaaaaggaatgagatttttgcattactcactaacaatgttcctaaaactccaactaagtaaaaacta |
133 |
Q |
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||||||||||||| | ||||||||||| ||||| ||||||||||||| |||||||||| ||| ||||| |
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| T |
14186565 |
atgaaaaggaatgggctttttgcattattcactcccaatgttcctaaagctccaactaactaagaacta |
14186497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 29890563 - 29890489
Alignment:
| Q |
69 |
aaaggaatgagatttttgcattactc--actaacaatgttcctaaaactccaactaagtaaaaactagctatcat |
141 |
Q |
| |
|
|||||||||| |||||||||||||| ||| ||||||||||| ||||||||||||| ||| |||||| |||||| |
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| T |
29890563 |
aaaggaatgaactttttgcattactcttactcacaatgttcctgaaactccaactaactaagaactagttatcat |
29890489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 8691836 - 8691781
Alignment:
| Q |
68 |
aaaaggaatgagatttttgcattactcacta-acaatgttcctaaaactccaacta |
122 |
Q |
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||||||||||||||||||||||||||||||| | |||| || |||||||||||||| |
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|
| T |
8691836 |
aaaaggaatgagatttttgcattactcactacaaaatgatcataaaactccaacta |
8691781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 9043705 - 9043650
Alignment:
| Q |
68 |
aaaaggaatgagatttttgcattactcacta-acaatgttcctaaaactccaacta |
122 |
Q |
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||||||||||||||||||||||||||||||| | |||| || |||||||||||||| |
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|
| T |
9043705 |
aaaaggaatgagatttttgcattactcactacaaaatgatcataaaactccaacta |
9043650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 17415833 - 17415792
Alignment:
| Q |
270 |
tccttttatagtacaagtcttgtctctatccaagttatgccc |
311 |
Q |
| |
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|||||||||||||||||||| | |||||||||| |||||||| |
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|
| T |
17415833 |
tccttttatagtacaagtctagcctctatccaaattatgccc |
17415792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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