View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_60 (Length: 250)
Name: NF17991_low_60
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 33193589 - 33193369
Alignment:
| Q |
18 |
aagtaccactaattaatcacatcacaacacaacacaacattaaacattgtcgtgacatgtttttaggtatgttatccaaaagtgtaattgcatgcatatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33193589 |
aagtaccactaattaatcacatcacaacacaaca-----ttaaacatggtcgtgacatgtttttaggtatgttatccaaaagtgtaattgcatgcatatg |
33193495 |
T |
|
| Q |
118 |
atatgacacagctactactagtactaagcttagatccattcccacactactctgtcccaagacaaacaggtagtaggttttggtttcccaagatgttctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33193494 |
atatgacacagctactactagtactaagcttagatctattcccacactactctgtcccaagacaaacaggtagtaggttttggtttcccaagatgttctt |
33193395 |
T |
|
| Q |
218 |
ttccaacttgcgttatcttcatctca |
243 |
Q |
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||||||||||||| |||||| ||||| |
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| T |
33193394 |
ttccaacttgcgtcatcttcttctca |
33193369 |
T |
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