View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_61 (Length: 243)
Name: NF17991_low_61
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 99 - 212
Target Start/End: Complemental strand, 1396209 - 1396096
Alignment:
| Q |
99 |
gaaagtgcattttccttcacaataaacttacttgggacacttcctatatcaataaattaccactaattcctatcgagcgacattcagaattagttgtcga |
198 |
Q |
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| T |
1396209 |
gaaagtgcattttccttcacaataaacttacttgggacacttcctatatcaagaaattaccactaattcctatcgagccacattcagaattagttgtcga |
1396110 |
T |
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| Q |
199 |
acaagtaactcgac |
212 |
Q |
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| T |
1396109 |
acaagtaactcgac |
1396096 |
T |
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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1396276 - 1396224
Alignment:
| Q |
1 |
gaaactgagactgtaaactcatttcaactaattaggggcacgaaccattactg |
53 |
Q |
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|||||||||||||||||||||| |||||||||||||| || |||||||||||| |
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| T |
1396276 |
gaaactgagactgtaaactcatctcaactaattagggtcaggaaccattactg |
1396224 |
T |
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