View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_64 (Length: 237)
Name: NF17991_low_64
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 1052387 - 1052269
Alignment:
| Q |
17 |
tattggatatatgttcctaacattattcataataagtttggctcatgttgttcaaggagaaacacgttgttactagactagtgatccactcatgtgcatc |
116 |
Q |
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| T |
1052387 |
tattggatatatgttcctaacattattcataataagtttggctcatgttgttcaaggagtaacacgttgttactagactagtgatccactcatgtgcatc |
1052288 |
T |
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| Q |
117 |
tcgactaaattgatggatg |
135 |
Q |
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| T |
1052287 |
tcgactaaattgatggatg |
1052269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 1052224 - 1052140
Alignment:
| Q |
134 |
tgttatcctttagatatggtgatttacataaatacttttgtggtgaattttgttgggttggaaataagagtttttgtggtggaga |
218 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1052224 |
tgttatcctttagatatggtgatttatataaatacttttgtggtggattttgttgggttggaaataagagtttttgtggtggaga |
1052140 |
T |
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