View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17991_low_68 (Length: 230)
Name: NF17991_low_68
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_68 |
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| [»] chr4 (4 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 47731991 - 47731772
Alignment:
| Q |
11 |
cagagataaaaatgaagtattgaaaaatgtagacaaaccaatacatatccattcaatccaaacagggctcttgaagtatctcaatctttgtctctcttaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47731991 |
cagagataaaaatgaagtattgaaaaatgtagacaaaccaatacatatccactcaatccaaacagggctcttgaagtatctttatctttgtctctcttaa |
47731892 |
T |
|
| Q |
111 |
ctgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaa |
210 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47731891 |
ctgttttatgtcttggattaaaacaacataagcatgaaacctcattgggaaaccattgaggatgttgatacaatgaagagaatcagagtagcaaacaaaa |
47731792 |
T |
|
| Q |
211 |
ttagtaatacccatttcttt |
230 |
Q |
| |
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|||||||||||||||||||| |
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| T |
47731791 |
ttagtaatacccatttcttt |
47731772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 230
Target Start/End: Original strand, 26333912 - 26334034
Alignment:
| Q |
108 |
taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca |
207 |
Q |
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||||| |||||| ||||| ||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||| | |||||| |||||| ||||| |
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| T |
26333912 |
taactcttttatgtcttgaattaaaacaacataagcatgtaacctcattggggggccattaaggatgttgatataatgtaaagaatcagagtagaaaaca |
26334011 |
T |
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| Q |
208 |
aaattagtaatacccatttcttt |
230 |
Q |
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||||||||||||||||||||||| |
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| T |
26334012 |
aaattagtaatacccatttcttt |
26334034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 50822894 - 50823008
Alignment:
| Q |
116 |
ttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagt |
215 |
Q |
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|||| ||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||||| || | ||| || |||||||||||||||| ||| |
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| T |
50822894 |
ttatgtcttgaattaaaacaacataagcatgaaacctcattgggggaccattgaggatgttgatacagtgtaaagagtcagagtagcaaacaaaatcagt |
50822993 |
T |
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| Q |
216 |
aatacccatttcttt |
230 |
Q |
| |
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||||| ||||||||| |
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| T |
50822994 |
aatactcatttcttt |
50823008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 11376216 - 11376325
Alignment:
| Q |
114 |
ttttatctcttggattaaaacaa-cataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatt |
212 |
Q |
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|||||| |||||||||| ||||| ||||||||| ||||||||||| ||| ||||| |||||||||| | |||||| |||||||||||||||| |
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| T |
11376216 |
ttttatgtcttggattagaacaaacataagcatgaaacctcatta--------ttggggatggtgatacaatgtaaagaatcagagtagcaaacaaaatc |
11376307 |
T |
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| Q |
213 |
agtaatacccatttcttt |
230 |
Q |
| |
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|||||||||||||||||| |
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| T |
11376308 |
agtaatacccatttcttt |
11376325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 108 - 230
Target Start/End: Original strand, 11052044 - 11052166
Alignment:
| Q |
108 |
taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca |
207 |
Q |
| |
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||||| |||||| ||||| ||||| ||||||||| ||| ||||||| || || ||||||||||||||||||||||||| | |||||| |||||||||||| |
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| T |
11052044 |
taactcttttatatcttgaattaatacaacataaacattaaacctcgttggggaaccattgaggatgttgatacaatgtaaagaatcagagtagcaaaca |
11052143 |
T |
|
| Q |
208 |
aaattagtaatacccatttcttt |
230 |
Q |
| |
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|||| ||||||||| |||||||| |
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| T |
11052144 |
aaatcagtaatacctatttcttt |
11052166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 11106874 - 11106777
Alignment:
| Q |
108 |
taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaa |
205 |
Q |
| |
|
||||| |||||| ||||| || |||||| ||||| ||| ||||||||| ||| |||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
11106874 |
taactcttttatatcttgaatcaaaacagcataaacatgaaacctcatgaggggaccattaaggatgttgatacaatgaagagaattagagtagcaaa |
11106777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 24874147 - 24874082
Alignment:
| Q |
165 |
attgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttcttt |
230 |
Q |
| |
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||||| ||||||||||||||| | |||||| || ||||||||||||| |||||||||||||||||| |
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| T |
24874147 |
attgaagatgttgatacaatgtaaagaatcagaatagcaaacaaaatcagtaatacccatttcttt |
24874082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 30987203 - 30987097
Alignment:
| Q |
114 |
ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatta |
213 |
Q |
| |
|
|||||| ||||| || |||||||||||| ||| | ||||| | || | |||| ||||||||||||||||||||| |||| ||||||||||| |||| | |
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| T |
30987203 |
ttttatatcttgaatcaaaacaacataaacatgatacctcctggggggatcattaaggatgttgatacaatgaagaaaatcagagtagcaaactaaatca |
30987104 |
T |
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| Q |
214 |
gtaatac |
220 |
Q |
| |
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|||||| |
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| T |
30987103 |
ttaatac |
30987097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 9083023 - 9083134
Alignment:
| Q |
114 |
ttttatctcttggattaaaacaacataagcataaaacctcattaggaa-accattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatt |
212 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||||| | || ||| |||||||||||||||| |
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| T |
9083023 |
ttttatatcttggattaaaacagaataagcatgaaacctcattggggggaccattgaggatgttgatacaatgtaaagcatcagagtagcaaacaaaatc |
9083122 |
T |
|
| Q |
213 |
agtaatacccat |
224 |
Q |
| |
|
| ||||||||| |
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|
| T |
9083123 |
aagaatacccat |
9083134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 12734595 - 12734486
Alignment:
| Q |
114 |
ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatta |
213 |
Q |
| |
|
|||||| ||||| || |||||| ||||| ||| ||||||||| || | ||||| |||||||||||||||||||||||||| ||||||||||| |||| | |
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|
| T |
12734595 |
ttttatatcttgaatcaaaacagcataaacatgaaacctcatggggga-ccattaaggatgttgatacaatgaagagaatcagagtagcaaactaaatca |
12734497 |
T |
|
| Q |
214 |
gtaatacccat |
224 |
Q |
| |
|
| ||||||||| |
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|
| T |
12734496 |
gaaatacccat |
12734486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 230
Target Start/End: Original strand, 43706607 - 43706729
Alignment:
| Q |
108 |
taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca |
207 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||| ||| |||||||||| || ||||| ||||||||||| |||||| | ||| || ||||| |||||| |
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| T |
43706607 |
taactattttatgtcttggattaaaacggcataaacatgaaacctcattgggggaccatggaggatgttgagacaatgtaaagagtcagagtaacaaaca |
43706706 |
T |
|
| Q |
208 |
aaattagtaatacccatttcttt |
230 |
Q |
| |
|
|||| |||||| || |||||||| |
|
|
| T |
43706707 |
aaatcagtaatgcctatttcttt |
43706729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 17654871 - 17654961
Alignment:
| Q |
114 |
ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaa |
205 |
Q |
| |
|
|||||| ||||| || |||||| ||||| || |||||||||| |||| ||||| |||||||||||||||| ||||||||| |||||||||| |
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|
| T |
17654871 |
ttttatatcttgaatcaaaacagcataaagatgaaacctcatttggaa-ccattaaggatgttgatacaataaagagaatcagagtagcaaa |
17654961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 41430547 - 41430633
Alignment:
| Q |
108 |
taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatc |
194 |
Q |
| |
|
||||| |||||| ||||| || ||||| ||||| ||||||||||||| | |||||| | |||||||||||||||||||||||| |
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|
| T |
41430547 |
taactcttttatatcttgaatcgaaacatcataaacataaaacctcatggagggaccattaaagatgttgatacaatgaagagaatc |
41430633 |
T |
|
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