View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_69 (Length: 227)
Name: NF17991_low_69
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 39610364 - 39610168
Alignment:
| Q |
12 |
agataatacttcaattttctcattttttccctctcctgtttcctggagggtaaaatcctagagatacgctcctccatttctctcaccagtctattgaatt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
39610364 |
agataatacttcaattttctcattttttccctctcctgtttcctggagggtaaaatcctagagatacgctcctccctttctctcatcagtctattgaatt |
39610265 |
T |
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| Q |
112 |
ccacttggcggtgactcacaaccctctcttgatatatctcctgtaaagccaaaccatatgatgaaacatcagacatactaggtaaatttaataaatg |
208 |
Q |
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| T |
39610264 |
ccacttggcggtgactcacaaccctctcttgatatatctcctgtaaagccaaaccatatgatgaaacatcagacatactaggtaaatttaataaatg |
39610168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 40159343 - 40159511
Alignment:
| Q |
12 |
agataatacttcaattttctcattttttccctctcctgtttcctggagggtaaaatcctagagatacgctcctccatttctctcaccagtctattgaatt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||| | | |||||| || |||||||||| |
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| T |
40159343 |
agataatacttcaattttctcattttttccctctcctgtttcctggagagtaaaatcttagagatcctgtccagcctgtctctctgcaacctattgaatt |
40159442 |
T |
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| Q |
112 |
ccacttggcggtgactcacaaccctctcttgatatatctcctgtaaagccaaaccatatgatgaaacat |
180 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |||||| |
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| T |
40159443 |
ccgcttggcggtgactcacaactctctcttgatatatctcctgcaaagccaaaccacatgataaaacat |
40159511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 33945528 - 33945574
Alignment:
| Q |
12 |
agataatacttcaattttctcattttttccctctcctgtttcctgga |
58 |
Q |
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||||||| |||||| || ||||||||||||||||||||||||||||| |
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| T |
33945528 |
agataatgcttcaacttcctcattttttccctctcctgtttcctgga |
33945574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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