View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_71 (Length: 206)
Name: NF17991_low_71
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 9733392 - 9733484
Alignment:
| Q |
96 |
ctccttgaaagtagccactaatagattaacccatcaataactcatgagagagaaaacatgaaccagaaatgatgagagttaaatgcatgtttt |
188 |
Q |
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| T |
9733392 |
ctccttgaaagtagccactaatagattaacccatcaataactcatgagagagaaaacatgaaccagaaatgatgagagttaaatgcatgtttt |
9733484 |
T |
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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 9733318 - 9733365
Alignment:
| Q |
19 |
actcaagatgtgccattcaccaacaacaaagaacaaaacaacaactat |
66 |
Q |
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| T |
9733318 |
actcaagatgtgccattcaccaacaacaaagaacaaaacaacaactat |
9733365 |
T |
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