View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_73 (Length: 201)
Name: NF17991_low_73
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 50807250 - 50807064
Alignment:
| Q |
1 |
ggtggagaagcacatttgaaatgtttgcggcggaaaagctagataggttcaagaaacaacaagagaagtgtcaatcgacactcttcagaattgcgtcgag |
100 |
Q |
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| T |
50807250 |
ggtggagaagcacatttgaaatgtttgcggcggaaaagctagataggttcaagaaacaacaagagaagtgtcaatcgacactcttcagaattgcgtcgag |
50807151 |
T |
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| Q |
101 |
caaagttggtagcagaaaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaatt |
187 |
Q |
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| T |
50807150 |
caaagttggtagcagaaaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaatt |
50807064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 50868627 - 50868813
Alignment:
| Q |
1 |
ggtggagaagcacatttgaaatgtttgcggcggaaaagctagataggttcaagaaacaacaagagaagtgtcaatcgacactcttcagaattgcgtcgag |
100 |
Q |
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| T |
50868627 |
ggtggagaagcacatttgaaatgtttgcggcggaaaagctagataggttcaagaaacaacaagagaagtgtcaatcgacactcttcagaattgcgtcgag |
50868726 |
T |
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| Q |
101 |
caaagttggtagcagaaaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaatt |
187 |
Q |
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| T |
50868727 |
caaagttggtagcagaaaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaatt |
50868813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 8e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 19056189 - 19056375
Alignment:
| Q |
1 |
ggtggagaagcacatttgaaatgtttgcggcggaaaagctagataggttcaagaaacaacaagagaagtgtcaatcgacactcttcagaattgcgtcgag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19056189 |
ggtggagaagcacatttgaaatgtttgcggcggaaaagctagataggttcaagaaacaacaagagaagtgtcaatcgacactcttgagaattgcgtcgag |
19056288 |
T |
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| Q |
101 |
caaagttggtagcagaaaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaatt |
187 |
Q |
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| T |
19056289 |
caaagttggtagcagaaaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgtttaatt |
19056375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 40 - 187
Target Start/End: Original strand, 40704546 - 40704693
Alignment:
| Q |
40 |
tagataggttcaagaaacaacaagagaagtgtcaatcgacactcttcagaattgcgtcgagcaaagttggtagcagaaaacctaatactccggtggtggc |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40704546 |
tagataggttcaagaaacaacaagagaagtgtcaatcgacactctcgagcattgcgtcgagcaaagttggtagcagaaaacctaatacgccggtggtggc |
40704645 |
T |
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| Q |
140 |
tgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaatt |
187 |
Q |
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| T |
40704646 |
tacaaatgcatcagcaaatggaagaaattcaagaaccggtgttaaatt |
40704693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32458511 - 32458473
Alignment:
| Q |
1 |
ggtggagaagcacatttgaaatgtttgcggcggaaaagc |
39 |
Q |
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| T |
32458511 |
ggtggagaagcacatttgaaatgtttgcagcggaaaagc |
32458473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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