View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_8 (Length: 463)
Name: NF17991_low_8
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 16 - 452
Target Start/End: Original strand, 34663692 - 34664128
Alignment:
| Q |
16 |
atcagcacatattttcattaaaaagttactaaaaaagttagttgtcatactatatcacaacaaaagctatctattacgatttccacaaaatatgatcaga |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34663692 |
atcagcacatattttcattaaaaagttactaaaaaagttagttgtcatactatatcacaacaaaagctatctattacgatttccacaaaatatgatcaga |
34663791 |
T |
|
| Q |
116 |
tatagaggatatcataaagtgacaaattgatacatcatacgcgaattgataattttagcatctgcaaaatatgttctttctcatgaatgttttatgagtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34663792 |
tatagaggatatcataaagtgacaaattgatacatcatacgcgaattgataattttagcatctgcaaaatatgttctttctcatgaatgttttatgagtt |
34663891 |
T |
|
| Q |
216 |
ggtgaaataccttcttagaaatcgcctttaatacgtttccccaaataggaaaaatgacaccacctaagacatttacttgctgaagtcttgagccaactga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34663892 |
ggtgaaataccttcttagaaatcgcctttaatacgtttccccaaataggaaaaatgacaccacctaagacatttacttgctgaagtcttgagccaactga |
34663991 |
T |
|
| Q |
316 |
acataacttgcctttcttacaattaggaccatgcatgcactgacaacaaaagtaataagtcaaaatgtgaatttgaaaaatctacatagtttctcacccc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34663992 |
acataacttgcctttcttacaattaggaccatgcatgcactgacaacaaaagtaataagtcaaaatgtgaatttgaaaaatctacatagtttctcacccc |
34664091 |
T |
|
| Q |
416 |
atgaccaatgagtgagtgtacaccaacatgtatatat |
452 |
Q |
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| T |
34664092 |
atgaccaatgagtgagtgcacaccaacatgtatatat |
34664128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 16 - 452
Target Start/End: Original strand, 26957462 - 26957898
Alignment:
| Q |
16 |
atcagcacatattttcattaaaaagttactaaaaaagttagttgtcatactatatcacaacaaaagctatctattacgatttccacaaaatatgatcaga |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26957462 |
atcaacacatattttcattaaaaagttactaaaaaagttatttgtcatactatatcacaacaaaagctaactattacgatttccacaaaatatgatcaga |
26957561 |
T |
|
| Q |
116 |
tatagaggatatcataaagtgacaaattgatacatcatacgcgaattgataattttagcatctgcaaaatatgttctttctcatgaatgttttatgagtt |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26957562 |
tatagaggatatcataaagcgacaaattgatacatcatacgcgaattgataattttagcatctgcaaaatatgttctttctcatgaatgttttatgagtt |
26957661 |
T |
|
| Q |
216 |
ggtgaaataccttcttagaaatcgcctttaatacgtttccccaaataggaaaaatgacaccacctaagacatttacttgctgaagtcttgagccaactga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26957662 |
ggtgaaataccttcttagaaatcgcctttaatacgtttccccaaataggaaaaatgacaccacctaagacatttacttgctgaagtcttgagccaactga |
26957761 |
T |
|
| Q |
316 |
acataacttgcctttcttacaattaggaccatgcatgcactgacaacaaaagtaataagtcaaaatgtgaatttgaaaaatctacatagtttctcacccc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26957762 |
acataacttgcctttcttacaattaggaccatgcatgcactgacaacaaaagtaataagtcaaaatgtgaatttgaaaaatctacatagtttctcacccc |
26957861 |
T |
|
| Q |
416 |
atgaccaatgagtgagtgtacaccaacatgtatatat |
452 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
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|
| T |
26957862 |
atgaccaatgagtgagtgcacaccaacatgtatatat |
26957898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 110 - 385
Target Start/End: Original strand, 26841065 - 26841340
Alignment:
| Q |
110 |
atcagatatagaggatatcataaagtgacaaattgatacatcatacgcgaattgataattttagcatctgcaaaatatgttctttctcatgaatgtttta |
209 |
Q |
| |
|
||||||| || | ||||||| ||| ||||||||||||||| ||||| |||| ||| || || ||||||||||||||||||||||||||||||||||| |
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| T |
26841065 |
atcagatctaaaagatatcaaaaattgacaaattgatacaacatacaaaaattaatatttataatatctgcaaaatatgttctttctcatgaatgtttta |
26841164 |
T |
|
| Q |
210 |
tgagttggtgaaataccttcttagaaatcgcctttaatacgtttccccaaataggaaaaatgacaccacctaagacatttacttgctgaagtcttgagcc |
309 |
Q |
| |
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|| |||||||||||||| |||||| | |||||| || ||||||||||| ||||| ||| ||||||||||||||||||||||| || | ||||||||| |
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| T |
26841165 |
tggattggtgaaatacctgcttagagagcgccttatctatgtttccccaaacaggaagaataacaccacctaagacatttacttgttgtattcttgagcc |
26841264 |
T |
|
| Q |
310 |
aactgaacataacttgcctttcttacaattaggaccatgcatgcactgacaacaaaagtaataagtcaaaatgtga |
385 |
Q |
| |
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||||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26841265 |
aactgaacagaacttaccaatcttacaattgggaccatgcatgcactgacaacaaaagtaataagtcaaaatgtga |
26841340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 252 - 370
Target Start/End: Original strand, 18456210 - 18456328
Alignment:
| Q |
252 |
ttccccaaataggaaaaatgacaccacctaagacatttacttgctgaagtcttgagccaactgaacataacttgcctttcttacaattaggaccatgcat |
351 |
Q |
| |
|
||||||||| ||||| ||||| ||||| |||||||| |||| ||| |||||| ||| |||| ||| || ||||| |||||||||| ||||||||||| |
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| T |
18456210 |
ttccccaaacaggaagaatgaggccacccaagacattcacttcctgtagtcttctgcccactgtacagaagttgccaatcttacaattgggaccatgcat |
18456309 |
T |
|
| Q |
352 |
gcactgacaacaaaagtaa |
370 |
Q |
| |
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|||||| ||| ||| |||| |
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|
| T |
18456310 |
gcactgtcaaaaaaggtaa |
18456328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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