View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17992_high_16 (Length: 318)
Name: NF17992_high_16
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_high_16 |
 | |
|
| [»] scaffold0531 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 159 - 303
Target Start/End: Original strand, 41381482 - 41381626
Alignment:
| Q |
159 |
tttacctgatagcttccaatgacatgtaaaaccacaaaaaagttagccattgcaataagccaagctggtttttccaaagacatgaggatattatctttaa |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41381482 |
tttacctgatagcttccaatgacatgtaaaaccacaaaaaagttagccattgcaataagccaagctggtttttccaaagacatgaggatattatctttaa |
41381581 |
T |
|
| Q |
259 |
cctcattgccaaacacataataaccgataacagcaacaggaaagt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41381582 |
cctcattgccaaacacataataaccgataatagcaacaggaaagt |
41381626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 41381322 - 41381418
Alignment:
| Q |
1 |
ttttcaaagactaaat--tgtcgtgaaatgagatcgacacttttaaattttaagaattacttcaaaatttcgctaaatttgatcatgacatcccatc |
95 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41381322 |
ttttcaaagactaaatattgtcgtgaaatgagatcgacacttttaaattttaagaattacttcaaaatttcgctaaatttgatcatgacatcccatc |
41381418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 159 - 303
Target Start/End: Original strand, 7971045 - 7971189
Alignment:
| Q |
159 |
tttacctgatagcttccaatgacatgtaaaaccacaaaaaagttagccattgcaataagccaagctggtttttccaaagacatgaggatattatctttaa |
258 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
7971045 |
tttacctggtagcttccaatcacatgcaaaaccacaaaaaagttagccattgcaataagccaagctgggttttccaaagacacgaggatattatccttaa |
7971144 |
T |
|
| Q |
259 |
cctcattgccaaacacataataaccgataacagcaacaggaaagt |
303 |
Q |
| |
|
|| |||||||||| | |||||||||||| |||||||||||||| |
|
|
| T |
7971145 |
ccccattgccaaatatccaataaccgataagagcaacaggaaagt |
7971189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 159 - 303
Target Start/End: Complemental strand, 8042668 - 8042524
Alignment:
| Q |
159 |
tttacctgatagcttccaatgacatgtaaaaccacaaaaaagttagccattgcaataagccaagctggtttttccaaagacatgaggatattatctttaa |
258 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
8042668 |
tttacctgataacttccaatcacatgcaaaaccacaaaaaagttagccattgcaataagccaagctgggttttccaaagacacgaggatattatccttaa |
8042569 |
T |
|
| Q |
259 |
cctcattgccaaacacataataaccgataacagcaacaggaaagt |
303 |
Q |
| |
|
|| |||||||||| | |||||||||||| ||||||||| |||| |
|
|
| T |
8042568 |
ccccattgccaaatatccaataaccgataatagcaacagggaagt |
8042524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 159 - 303
Target Start/End: Complemental strand, 8032764 - 8032620
Alignment:
| Q |
159 |
tttacctgatagcttccaatgacatgtaaaaccacaaaaaagttagccattgcaataagccaagctggtttttccaaagacatgaggatattatctttaa |
258 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| | ||||| ||||| || |||||| |||||||||||||||| || |||| |||||| |||| |
|
|
| T |
8032764 |
tttacctgatagcttccaattacatgtaaaactacaaataggttagatattgcgatgagccaaactggtttttccaaagagattaggacattatccttaa |
8032665 |
T |
|
| Q |
259 |
cctcattgccaaacacataataaccgataacagcaacaggaaagt |
303 |
Q |
| |
|
| ||||| |||||||| ||||||| |||| |||||||||||||| |
|
|
| T |
8032664 |
cttcattaccaaacacccaataaccaataatagcaacaggaaagt |
8032620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 7970903 - 7970967
Alignment:
| Q |
23 |
gaaatgagatcgacacttttaaattttaagaattacttcaaaatttcgctaaatttgatcatgac |
87 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
7970903 |
gaaatgagatcgatacatttaaattttaagaattactttgaaatttcgttaaatttgatcatgac |
7970967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 7977978 - 7978066
Alignment:
| Q |
159 |
tttacctgatagcttccaatgacatgtaaaaccacaaaaaagttagccattgcaataagccaagctggtttttccaaagacatgaggat |
247 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||| ||||| | |||||| ||||||||||||| || ||||| | ||||| |||||||| |
|
|
| T |
7977978 |
tttacctgatagcttccaatcacatgaataacaacaaacatgttagctgttgcaataagccatgcaggtttctgtaaagatatgaggat |
7978066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 159 - 303
Target Start/End: Original strand, 2343 - 2487
Alignment:
| Q |
159 |
tttacctgatagcttccaatgacatgtaaaaccacaaaaaagttagccattgcaataagccaagctggtttttccaaagacatgaggatattatctttaa |
258 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| | ||||| |||||||| |||||||| |||||||||||||| ||||||| |||||| |||| |
|
|
| T |
2343 |
tttacctgatagcttccaattacatgtaaaacaacaaataggttagatattgcaatgagccaagcaggtttttccaaagagatgaggacattatccttaa |
2442 |
T |
|
| Q |
259 |
cctcattgccaaacacataataaccgataacagcaacaggaaagt |
303 |
Q |
| |
|
| | ||||||||||| ||||||| || | |||||||||||||| |
|
|
| T |
2443 |
cttgattgccaaacatccaataaccaattatagcaacaggaaagt |
2487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 14197929 - 14197990
Alignment:
| Q |
159 |
tttacctgatagcttccaatgacatgtaaaaccacaaaaaagttagccattgcaataagcca |
220 |
Q |
| |
|
|||||||| ||||||||||| ||||| | ||| ||||| | ||| ||||||||||||||||| |
|
|
| T |
14197929 |
tttacctggtagcttccaataacatggataacaacaaacatgtttgccattgcaataagcca |
14197990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University