View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17992_high_20 (Length: 291)

Name: NF17992_high_20
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17992_high_20
NF17992_high_20
[»] chr4 (16 HSPs)
chr4 (93-275)||(47606411-47606596)
chr4 (115-201)||(29833514-29833601)
chr4 (119-169)||(1273353-1273403)
chr4 (92-193)||(4373495-4373599)
chr4 (119-278)||(15446479-15446636)
chr4 (116-169)||(37559141-37559194)
chr4 (124-277)||(23153062-23153226)
chr4 (115-201)||(29834319-29834406)
chr4 (101-163)||(53757908-53757971)
chr4 (119-169)||(5688557-5688607)
chr4 (119-169)||(26788668-26788718)
chr4 (119-169)||(33377284-33377334)
chr4 (119-169)||(55953772-55953822)
chr4 (101-169)||(53757503-53757571)
chr4 (134-169)||(44128254-44128289)
chr4 (119-167)||(3217532-3217580)
[»] scaffold0012 (2 HSPs)
scaffold0012 (93-275)||(243399-243584)
scaffold0012 (93-278)||(242564-242752)
[»] chr1 (14 HSPs)
chr1 (93-278)||(6709789-6709977)
chr1 (112-275)||(6710636-6710801)
chr1 (120-169)||(25786115-25786164)
chr1 (119-201)||(2971846-2971929)
chr1 (115-201)||(25889379-25889466)
chr1 (129-201)||(14391163-14391236)
chr1 (116-169)||(47411368-47411421)
chr1 (124-169)||(52181225-52181270)
chr1 (120-164)||(25787089-25787133)
chr1 (119-201)||(48973345-48973428)
chr1 (119-169)||(16217586-16217636)
chr1 (124-201)||(34531815-34531893)
chr1 (233-278)||(14391265-14391310)
chr1 (233-278)||(20953548-20953593)
[»] chr3 (22 HSPs)
chr3 (94-275)||(9769313-9769500)
chr3 (93-277)||(33149602-33149798)
chr3 (93-260)||(9776976-9777148)
chr3 (93-263)||(29822575-29822751)
chr3 (92-169)||(29821434-29821511)
chr3 (93-169)||(382891-382967)
chr3 (117-265)||(382099-382252)
chr3 (119-201)||(29536859-29536942)
chr3 (116-164)||(42632849-42632897)
chr3 (119-169)||(47808027-47808077)
chr3 (119-169)||(51825541-51825591)
chr3 (233-278)||(7820647-7820692)
chr3 (116-169)||(42633806-42633859)
chr3 (93-169)||(33150600-33150676)
chr3 (116-168)||(41387354-41387406)
chr3 (119-261)||(52293352-52293492)
chr3 (119-201)||(12060785-12060868)
chr3 (119-201)||(47854633-47854716)
chr3 (119-201)||(48825959-48826042)
chr3 (115-169)||(2124171-2124225)
chr3 (120-165)||(47806964-47807009)
chr3 (134-201)||(39287611-39287679)
[»] chr6 (8 HSPs)
chr6 (93-277)||(9754126-9754316)
chr6 (93-277)||(28930920-28931109)
chr6 (93-169)||(28928475-28928551)
chr6 (92-169)||(4030266-4030343)
chr6 (93-166)||(4030786-4030859)
chr6 (93-263)||(24546886-24547062)
chr6 (119-170)||(16269536-16269587)
chr6 (154-196)||(17358980-17359023)
[»] chr8 (8 HSPs)
chr8 (28-95)||(3171047-3171114)
chr8 (120-169)||(27750541-27750590)
chr8 (119-169)||(3237563-3237613)
chr8 (120-169)||(38589967-38590016)
chr8 (124-201)||(8096451-8096529)
chr8 (119-169)||(31624052-31624102)
chr8 (233-278)||(38665667-38665712)
chr8 (233-278)||(45385608-45385653)
[»] chr5 (3 HSPs)
chr5 (93-169)||(11431385-11431461)
chr5 (119-169)||(1663334-1663384)
chr5 (142-201)||(4567120-4567180)
[»] chr2 (10 HSPs)
chr2 (93-169)||(15269012-15269088)
chr2 (97-196)||(18342863-18342965)
chr2 (119-201)||(41312647-41312730)
chr2 (93-155)||(18343824-18343886)
chr2 (119-201)||(3665371-3665454)
chr2 (119-170)||(6208984-6209035)
chr2 (123-201)||(14510415-14510494)
chr2 (119-201)||(33836916-33836999)
chr2 (119-201)||(42246737-42246820)
chr2 (116-265)||(15268524-15268683)
[»] chr7 (11 HSPs)
chr7 (115-201)||(30223863-30223950)
chr7 (115-169)||(22061715-22061769)
chr7 (119-169)||(35128112-35128162)
chr7 (115-201)||(30222788-30222875)
chr7 (119-201)||(41126386-41126469)
chr7 (119-169)||(22060609-22060659)
chr7 (93-162)||(48754116-48754185)
chr7 (134-201)||(41618385-41618453)
chr7 (119-196)||(33458456-33458534)
chr7 (119-204)||(36673719-36673805)
chr7 (233-278)||(48754253-48754298)
[»] scaffold0178 (1 HSPs)
scaffold0178 (119-201)||(2151-2234)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 93 - 275
Target Start/End: Complemental strand, 47606596 - 47606411
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacac--aatttacaatagactcacaaca 190  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  47606596 ttttttgctaaaaccgttaaatcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaaaatttacaataaactcacaaca 47606497  T
Q  191 tatgatcatttataatctttccttgtttgtcttgaacttcct-aaattaaaaatcaccaacaatcttcatcttcttccctcttcat 275  Q
    ||||||||||||||||||||||  |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47606496 tatgatcatttataatctttccccgtttgtcttgaatttcctaaaattaaaaatcaccaacaatcttcatcttcttccctcttcat 47606411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 29833514 - 29833601
Alignment:
Q  115 cttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaa-tttacaatagactcacaacatatgatcattt 201  Q
    |||||||| ||||| ||| |||||||||||||||| | ||||| ||||| |||||| | |||||| |||||||||||||| |||||||    
T  29833514 cttgccacatgtcaattaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatggactcacaacatataatcattt 29833601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 1273403 - 1273353
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  1273403 ccacgtgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 1273353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 4373495 - 4373599
Alignment:
Q  92 gttttttgctaaaaccgttaag-tcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca--atttacaatagactcacaa 188  Q
    ||||||||| ||| |||||||  |||| |||||||||| |||||||||||||| || || ||||||| |||||||||||   | |||||| |||||||||    
T  4373495 gttttttgcaaaatccgttaacctctttccacgtgtcatttaggattggtgattaatggctggatttgaaaagcacacatggtatacaatggactcacaa 4373594  T
Q  189 catat 193  Q
    |||||    
T  4373595 catat 4373599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 278
Target Start/End: Complemental strand, 15446636 - 15446479
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaa-tttacaatagactcacaacatatgatcatttataatctttccttgtt 217  Q
    |||| ||||| ||| |||||||||||||||||| ||||| ||||| ||||||   |||||| | |||||||||||||||||||| ||   ||| |||| |    
T  15446636 ccacatgtcatttaagattggtgatcaagggtttgattttaaaagtacacaaccatacaatgggctcacaacatatgatcatttcta--tttttcttgat 15446539  T
Q  218 tgtcttgaacttcctaaattaaaaatcaccaacaatcttcatcttcttccctcttcatctc 278  Q
    | |||| ||  |   ||||| ||| |||||  |||||||||||||||||||||||||||||    
T  15446538 tttcttaaaaat-aaaaatttaaagtcaccttcaatcttcatcttcttccctcttcatctc 15446479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 37559141 - 37559194
Alignment:
Q  116 ttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    ||||||| |||||||||  |||||||||||| ||||||||||||||||||||||    
T  37559141 ttgccacatgtcacttaaaattggtgatcaacggttggatttaaaaagcacaca 37559194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 23153226 - 23153062
Alignment:
Q  124 tgtcacttaggattggtgatcaagggttggatttaaaaagcacacaatt-tacaatagactcacaacatatgatcatt--tataatctttccttgtttgt 220  Q
    ||||| ||||||||  |||||||||||||||||| |||| ||||||||| ||||||  ||||||||||||| || |||  |||  ||||||  | ||| |    
T  23153226 tgtcatttaggattaatgatcaagggttggatttgaaaaacacacaattatacaatgaactcacaacatataataatttctattgtctttctctatttct 23153127  T
Q  221 cttgaacttcct--------aaattaaaaatcaccaacaatcttcatcttcttccctcttcatct 277  Q
    |||||| |||||        |||||||||||||  |||||||||||||||| | |||||||||||    
T  23153126 cttgaatttcctaaaaataaaaattaaaaatcagtaacaatcttcatcttccttcctcttcatct 23153062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 29834406 - 29834319
Alignment:
Q  115 cttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaa-tttacaatagactcacaacatatgatcattt 201  Q
    |||||||| ||||| ||| |||||||||||||||| |  |||| ||||| |||||| | |||||| |||||||||||||| |||||||    
T  29834406 cttgccacatgtcatttaagattggtgatcaagggctatatttgaaaagtacacaagtatacaatggactcacaacatataatcattt 29834319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 53757971 - 53757908
Alignment:
Q  101 taaaaccgttaagtcttgccacgtgtcacttaggattggtgatc-aagggttggatttaaaaag 163  Q
    |||||||||||| ||||| ||||||||| ||| ||||| ||||| |||||||||||||||||||    
T  53757971 taaaaccgttaactcttggcacgtgtcatttaagattgatgatcaaagggttggatttaaaaag 53757908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 5688607 - 5688557
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||||||||||| ||||| ||||||| ||||||||||| ||||||||||    
T  5688607 ccacgtgtcacttaagattgatgatcaacggttggatttataaagcacaca 5688557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 26788668 - 26788718
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||||||| ||| ||||||||||||| ||||| ||||||||||||||||    
T  26788668 ccacgtgtcagttaagattggtgatcaacggttgaatttaaaaagcacaca 26788718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 33377334 - 33377284
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||||||  ||| ||||||||||||| ||||||||||||||||||||||    
T  33377334 ccacgtgtcgtttaagattggtgatcaacggttggatttaaaaagcacaca 33377284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 55953822 - 55953772
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||||||| ||| ||||||||||||| ||||| ||||||||||||||||    
T  55953822 ccacgtgtcatttaagattggtgatcaacggttgaatttaaaaagcacaca 55953772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 53757503 - 53757571
Alignment:
Q  101 taaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||| |||||||||||||||||  |||| ||| ||||| | ||||| |||||||| |||||||||||||    
T  53757503 taaatccgttaagtcttgccacaagtcatttaagattgataatcaaaggttggatctaaaaagcacaca 53757571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 44128289 - 44128254
Alignment:
Q  134 gattggtgatcaagggttggatttaaaaagcacaca 169  Q
    ||||||||||||| ||||||||||||||||||||||    
T  44128289 gattggtgatcaacggttggatttaaaaagcacaca 44128254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 3217580 - 3217532
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcaca 167  Q
    |||||||||| |||  |||| ||||||| ||||||||||||||||||||    
T  3217580 ccacgtgtcagttaaaattgatgatcaacggttggatttaaaaagcaca 3217532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 93 - 275
Target Start/End: Complemental strand, 243584 - 243399
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacac--aatttacaatagactcacaaca 190  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||  ||||||| ||||||||||||||    
T  243584 ttttttgctaaaatcgttaagtcttgccacgtgtcacttaggattagtgatcaaggattggatttaaaaagcacacaaaatttacgatagactcacaaca 243485  T
Q  191 tatgatcatttataatctttccttgtttgtcttgaacttcct-aaattaaaaatcaccaacaatcttcatcttcttccctcttcat 275  Q
    |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  243484 tatgatcatttataatctttccctgtttgtcttgaatttcctaaaattaaaaattaccaacaatcttcatcttcttccctcttcat 243399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 93 - 278
Target Start/End: Original strand, 242564 - 242752
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacac--aatttacaatagactcacaaca 190  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||  |||||||||| |||||||||||    
T  242564 ttttttgctaaaactgttaagtcttgccatgtgtcacttagaattggtgatcaagggtttgatttgaaaagcacacaaaatttacaatggactcacaaca 242663  T
Q  191 tatgatcatttataatctttccttgtttgtcttgaacttcct-aaattaaaaatcaccaacaatcttcatcttcttccctcttcatctc 278  Q
    |||||||||||||||||||||| | ||||||||||| || || |||||||||||||||||||||||||||||| |||||||||||||||    
T  242664 tatgatcatttataatctttccctatttgtcttgaattttctaaaattaaaaatcaccaacaatcttcatctttttccctcttcatctc 242752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 9e-70; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 93 - 278
Target Start/End: Original strand, 6709789 - 6709977
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacac--aatttacaatagactcacaaca 190  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||  |||||||||| |||||||||||    
T  6709789 ttttttgctaaaactgttaagtcttgccacgtgtcacttaggattggtgatcaagggtttgatttgaaaaacacacaaaatttacaatggactcacaaca 6709888  T
Q  191 tatgatcatttataatctttccttgtttgtcttgaacttcct-aaattaaaaatcaccaacaatcttcatcttcttccctcttcatctc 278  Q
    |||||||||||||||||||||| | ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||    
T  6709889 tatgatcatttataatctttccctatttgtcttgaattttctaaaattaaaaatcaccaacaatcttcatcttcttccctcttcatctc 6709977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 112 - 275
Target Start/End: Complemental strand, 6710801 - 6710636
Alignment:
Q  112 agtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacac--aatttacaatagactcacaacatatgatcatttataatctt 209  Q
    ||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||    
T  6710801 agtcttgccacatgtcacttagaattggtgatcaagggttgaatttaaaaagcacacaaaatttacgatagactcacaacatatgatcatttataatctt 6710702  T
Q  210 tccttgtttgtcttgaacttcct-aaattaaaaatcaccaacaatcttcatcttcttccctcttcat 275  Q
    | | ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  6710701 t-cgtgtttgtcttgaatttcctaaaattaaaaattaccaacaatcttcatcttcttccctcttcat 6710636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 25786115 - 25786164
Alignment:
Q  120 cacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  25786115 cacgtgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 25786164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 2971846 - 2971929
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacac-aatttacaatagactcacaacatatgatcattt 201  Q
    |||||||||| ||| |||||| ||||||||| |||||||| ||||||||| ||| || |||  |||||||||||||||| ||||    
T  2971846 ccacgtgtcatttaagattggcgatcaagggctggatttagaaagcacacaaatataaaatgaactcacaacatatgattattt 2971929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 25889466 - 25889379
Alignment:
Q  115 cttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaa-tttacaatagactcacaacatatgatcattt 201  Q
    |||||||| ||||| ||| |||||||||||||||| | ||||| ||||  |||||| | |||||| |||||||||||||| |||||||    
T  25889466 cttgccacatgtcatttaagattggtgatcaagggctagatttgaaaaatacacaagtatacaatggactcacaacatataatcattt 25889379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 14391163 - 14391236
Alignment:
Q  129 cttaggattggtgatcaagggttggatttaaaaagcacacaa-tttacaatagactcacaacatatgatcattt 201  Q
    |||| ||||| |||||||||||| ||||| ||||| |||||| | |||||| | ||||||||||||||||||||    
T  14391163 cttaagattgatgatcaagggtttgatttgaaaagtacacaagtatacaatgggctcacaacatatgatcattt 14391236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 47411421 - 47411368
Alignment:
Q  116 ttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    ||||||| ||||| ||| ||||||||||||| ||||| ||||||||||||||||    
T  47411421 ttgccacatgtcatttaagattggtgatcaacggttgaatttaaaaagcacaca 47411368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 52181270 - 52181225
Alignment:
Q  124 tgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    ||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  52181270 tgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 52181225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 25787133 - 25787089
Alignment:
Q  120 cacgtgtcacttaggattggtgatcaagggttggatttaaaaagc 164  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||    
T  25787133 cacgtgtcatttaagattggtgatcaacggttggatttaaaaagc 25787089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 48973345 - 48973428
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaa-tttacaatagactcacaacatatgatcattt 201  Q
    |||| ||||| ||| |||||||||||||||| | ||||| ||||| |||||| | |||||| | |||||||||||| |||||||    
T  48973345 ccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatgggctcacaacatataatcattt 48973428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 16217586 - 16217636
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||||||| ||| |||||| |||||| |||| |||||||||||||||||    
T  16217586 ccacgtgtcatttaagattggcgatcaacggttagatttaaaaagcacaca 16217636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 34531815 - 34531893
Alignment:
Q  124 tgtcacttaggattggtgatcaagggttggatttaaaaagcacac-aatttacaatagactcacaacatatgatcattt 201  Q
    ||||| ||| |||||||||||||||| | ||||| ||||| |||| ||| |||||| | |||||||||||| |||||||    
T  34531815 tgtcatttaagattggtgatcaagggctagatttgaaaagtacacaaatatacaatgggctcacaacatataatcattt 34531893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 14391265 - 14391310
Alignment:
Q  233 aaattaaaaatcaccaacaatcttcatcttcttccctcttcatctc 278  Q
    ||||| ||| |||||| ||||||||||||||||||||||| |||||    
T  14391265 aaattgaaattcaccatcaatcttcatcttcttccctcttaatctc 14391310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 20953548 - 20953593
Alignment:
Q  233 aaattaaaaatcaccaacaatcttcatcttcttccctcttcatctc 278  Q
    |||||||||||||| |  ||||||||||||||| ||||||||||||    
T  20953548 aaattaaaaatcactataaatcttcatcttctttcctcttcatctc 20953593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 94 - 275
Target Start/End: Complemental strand, 9769500 - 9769313
Alignment:
Q  94 tttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacac---aatttacaatagactcacaaca 190  Q
    ||||||||||||| |||||  || |||||||||||||||||||||||||| |  |||||||||| |||| || ||   |||||||||| |||||||||||    
T  9769500 tttttgctaaaactgttaacactcgccacgtgtcacttaggattggtgatgagaggttggatttgaaaaccagacaaaaatttacaattgactcacaaca 9769401  T
Q  191 tatgatcatttata--atctttccttgtttgtcttgaacttcct-aaattaaaaatcaccaacaatcttcatcttcttccctcttcat 275  Q
    |||||| |||||||  ||||||| || ||| ||||||| ||| | ||||||||||| |||||||| ||||||||||||||||||||||    
T  9769400 tatgataatttatattatctttctttatttatcttgaatttcttaaaattaaaaattaccaacaaacttcatcttcttccctcttcat 9769313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 277
Target Start/End: Original strand, 33149602 - 33149798
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca---atttacaatagactcacaac 189  Q
    ||||||| ||||||||||||  |||||||||||||||||| |||| ||||||||||||| |||||||||||| ||||   || || ||| ||||  ||||    
T  33149602 ttttttgttaaaaccgttaacccttgccacgtgtcacttaagatttgtgatcaagggttagatttaaaaagcgcacacacatatataatggactagcaac 33149701  T
Q  190 atatgatcattt-ataatctttccttgtttgtcttgaacttcct--------aaattaaaaatcaccaacaatcttcatcttcttccctcttcatct 277  Q
    ||||||| |||| || |||||||||| |||||||| || |||||        ||||||||||| ||||| |||||||||||||||||||||||||||    
T  33149702 atatgataatttaattatctttccttatttgtcttaaatttcctaaaactacaaattaaaaattaccaataatcttcatcttcttccctcttcatct 33149798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 260
Target Start/End: Original strand, 9776976 - 9777148
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca---atttacaatagactcacaac 189  Q
    |||||||||| | | |||||  |||||||| ||||| ||||||||| ||||||| |||||||||| ||| |||||||   ||||||||| || |||||||    
T  9776976 ttttttgctacatctgttaacccttgccacatgtcatttaggattgttgatcaaaggttggatttgaaa-gcacacacaaatttacaatggattcacaac 9777074  T
Q  190 atatgatcatttata--atctttccttgtttgtcttgaacttcctaaa-ttaaaaatcaccaacaatcttcatc 260  Q
    ||||||| |||||||  |||||||  |||||||||| || |||||||| |||||||||||||||||||||||||    
T  9777075 atatgataatttatattatctttctctgtttgtcttaaatttcctaaaattaaaaatcaccaacaatcttcatc 9777148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 93 - 263
Target Start/End: Complemental strand, 29822751 - 29822575
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacac---aatttacaatagactcacaac 189  Q
    ||||||| |||||||||||| ||||||||| ||||||||| ||||| | || || ||||||||||||||||||| |   ||| |||||||||||||        
T  29822751 ttttttgttaaaaccgttaactcttgccacatgtcacttaagattgattatgaatggttggatttaaaaagcactcacaaatatacaatagactcaatgt 29822652  T
Q  190 atatgatcatttata--atctttccttgtttgtcttgaacttcct-aaattaaaaatcaccaacaatcttcatcttc 263  Q
    ||||||| |||||||  || ||| ||| |||||||| || ||| | |||||||||||||| || |||||||||||||    
T  29822651 atatgataatttatattatatttacttatttgtctttaatttcttaaaattaaaaatcacaaataatcttcatcttc 29822575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 29821434 - 29821511
Alignment:
Q  92 gttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||||| |||||||||||| |||||| |||||||||||| ||||| | ||||| | || |||||||||||||||||    
T  29821434 gttttttgttaaaaccgttaactcttgctacgtgtcacttaagattgataatcaatgattagatttaaaaagcacaca 29821511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 382967 - 382891
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||| | |||||||||||  |||||||||||||| ||| ||||||||||||||||||  |||| |||||||||||    
T  382967 ttttttacaaaaaccgttaacacttgccacgtgtcatttatgattggtgatcaagggttaaatttgaaaagcacaca 382891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 265
Target Start/End: Original strand, 382099 - 382252
Alignment:
Q  117 tgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaatt---tacaatagactcacaacatatgatcatttata--atc-ttt 210  Q
    |||||| ||||| ||  |||||||||||||||| || |||| |||||||||||      |||||||||||| ||||||||||| |||| ||  ||| |||    
T  382099 tgccacatgtcatttgtgattggtgatcaagggctgaattttaaaagcacacacaaggatacaatagactcgcaacatatgataatttttattatcattt 382198  T
Q  211 ccttgtttgtcttgaacttcctaaa-ttaaaaatcaccaacaatcttcatcttctt 265  Q
    ||||  |||||||||| ||| |||| |||||||||| |||||||||||||||||||    
T  382199 cctt--ttgtcttgaatttcttaaaattaaaaatcatcaacaatcttcatcttctt 382252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 29536859 - 29536942
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaatt-tacaatagactcacaacatatgatcattt 201  Q
    |||| ||||| ||| |||| ||||||||||||| ||||| ||||| || ||| | |||||||||||||||||||||||||||||    
T  29536859 ccacatgtcatttaagatttgtgatcaagggttagatttgaaaagtacgcaagtatacaatagactcacaacatatgatcattt 29536942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 42632849 - 42632897
Alignment:
Q  116 ttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagc 164  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  42632849 ttgccacgtgtcatttaagattggtgatcaacggttggatttaaaaagc 42632897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 47808077 - 47808027
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||||||| ||| ||| ||||||||| ||||||||||||||||||||||    
T  47808077 ccacgtgtcagttaagatcggtgatcaacggttggatttaaaaagcacaca 47808027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 51825591 - 51825541
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||||||| ||| ||||||||||||| ||||| ||||||||||||||||    
T  51825591 ccacgtgtcagttaagattggtgatcaatggttgaatttaaaaagcacaca 51825541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 7820647 - 7820692
Alignment:
Q  233 aaattaaaaatcaccaacaatcttcatcttcttccctcttcatctc 278  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||||    
T  7820647 aaatttaaaatcaccatcaatctttatcttcttccctcttcatctc 7820692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 42633859 - 42633806
Alignment:
Q  116 ttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    ||||||| ||||| ||| ||||||| ||||| ||||||||||||||||||||||    
T  42633859 ttgccacatgtcatttaagattggtaatcaacggttggatttaaaaagcacaca 42633806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 33150676 - 33150600
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    ||||||| ||||||||||||   || | |||||||||||| ||||||| ||||| |||||||| | |||||||||||    
T  33150676 ttttttgttaaaaccgttaaccattactacgtgtcacttaagattggttatcaatggttggatatgaaaagcacaca 33150600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 41387406 - 41387354
Alignment:
Q  116 ttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacac 168  Q
    ||||||| ||||| |||  |||||||||||| |||||||||||||||||||||    
T  41387406 ttgccacatgtcatttaaaattggtgatcaacggttggatttaaaaagcacac 41387354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 261
Target Start/End: Complemental strand, 52293492 - 52293352
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaatt-tacaatagactcacaacatatgatcatttataatctttccttgtt 217  Q
    |||| ||||| ||| |||||||||||||||| |  |||| ||||| |||||| | |||||||| |||||||||||| ||||||| || ||||  |||| |    
T  52293492 ccacatgtcatttaagattggtgatcaagggctatatttgaaaagtacacaagtatacaataggctcacaacatataatcatttctattctt--cttgat 52293395  T
Q  218 tgtcttgaacttcctaaattaaaaatcaccaacaatcttcatct 261  Q
    | || | || ||  |||||| |||||||||| ||||||||||||    
T  52293394 tttcctaaaatt-ataaatttaaaatcaccatcaatcttcatct 52293352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 12060785 - 12060868
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacac-aatttacaatagactcacaacatatgatcattt 201  Q
    |||| ||||||||| ||||||||||||| || || ||||| ||||||| | ||| ||||||| |||| ||||| ||||||||||    
T  12060785 ccacatgtcacttaagattggtgatcaatggctgaatttagaaagcacgcaaatatacaataaactcgcaacagatgatcattt 12060868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 47854633 - 47854716
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaatt-tacaatagactcacaacatatgatcattt 201  Q
    |||| ||||| ||| |||| |||||||||| || ||||| ||||| || ||| | |||||| ||||||||||||||||||||||    
T  47854633 ccacatgtcatttaagatttgtgatcaaggattagatttgaaaagtacgcaagtatacaatggactcacaacatatgatcattt 47854716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 48825959 - 48826042
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaa-tttacaatagactcacaacatatgatcattt 201  Q
    |||| ||||| ||| |||||||||||||||||| | ||| ||||| |||||| | |||||| | |||||||||||| |||||||    
T  48825959 ccacatgtcatttaagattggtgatcaagggttaggtttgaaaagtacacaagtatacaatgggctcacaacatataatcattt 48826042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 2124171 - 2124225
Alignment:
Q  115 cttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||| ||| ||||| ||| |||| |||||||| ||||||||||||||||||||||    
T  2124171 cttgtcacatgtcatttaagattagtgatcaacggttggatttaaaaagcacaca 2124225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 47806964 - 47807009
Alignment:
Q  120 cacgtgtcacttaggattggtgatcaagggttggatttaaaaagca 165  Q
    ||||||||| ||| ||| ||||||||| ||||||||||||||||||    
T  47806964 cacgtgtcagttaagatcggtgatcaatggttggatttaaaaagca 47807009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 39287611 - 39287679
Alignment:
Q  134 gattggtgatcaagggttggatttaaaaagcacac-aatttacaatagactcacaacatatgatcattt 201  Q
    |||||||||||||||| | ||||| ||||| |||| ||| |||||| | |||||||||||| |||||||    
T  39287611 gattggtgatcaagggctagatttgaaaagtacacaaatatacaatgggctcacaacatataatcattt 39287679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 93 - 277
Target Start/End: Complemental strand, 9754316 - 9754126
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaa---tttacaatagactcacaac 189  Q
    |||||||||||||| |||||   ||||||| ||||||||||||||||||||||||||||| ||||  ||||| ||||    | ||||||||| |||||      
T  9754316 ttttttgctaaaactgttaacctttgccacatgtcacttaggattggtgatcaagggttgaatttgtaaagctcacacgagtatacaatagattcacagt 9754217  T
Q  190 atatgatcatttata--atctttccttgtttgtcttgaacttcctaaa-ttaaaaatcaccaacaatcttcatcttcttccctcttcatct 277  Q
    ||||||| |||||||  ||||||  || ||||||| ||| |||||||| |||||||||||||| ||||| || ||||||||||||||||||    
T  9754216 atatgataatttatattatctttttttatttgtctcgaatttcctaaaattaaaaatcaccaataatctccaccttcttccctcttcatct 9754126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 277
Target Start/End: Complemental strand, 28931109 - 28930920
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacac---aatttacaatagactcacaac 189  Q
    ||||||| ||||||||  || ||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| |   ||| ||||||  ||| |||      
T  28931109 ttttttgttaaaaccgccaactcttgccacatgtcacttaagattgatgatcaagggttggatttaaaaagcactcacaaatatacaatgaacttacagt 28931010  T
Q  190 atatgatcatttata--atctttccttgtttgtcttgaacttcct-aaattaaaaatcaccaacaatcttcatcttcttccctcttcatct 277  Q
    ||||||| |||||||  || |||| || |||||||| || ||| | |||||||||||||| || ||||||||| ||||| |||||||||||    
T  28931009 atatgataatttatattatatttcattatttgtctttaatttcttaaaattaaaaatcacaaaaaatcttcatattctt-cctcttcatct 28930920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 28928475 - 28928551
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    ||||||| |||||||||||||||||||||| | ||||||| ||||| | |||||||||||||| |||||||||||||    
T  28928475 ttttttgttaaaaccgttaagtcttgccacatatcacttaagattgataatcaagggttggatctaaaaagcacaca 28928551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 4030266 - 4030343
Alignment:
Q  92 gttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||||| |||||| ||||| |||||||||||||||||||  |||| | ||||| || |||||||||||||||||||    
T  4030266 gttttttgttaaaactgttaactcttgccacgtgtcacttaaaattgataatcaatggatggatttaaaaagcacaca 4030343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 4030859 - 4030786
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcac 166  Q
    ||||||| |||||||||||| |||| |||| ||||||||| ||||| | || || |||||||||||||||||||    
T  4030859 ttttttgttaaaaccgttaactcttaccacatgtcacttaagattgattatgaatggttggatttaaaaagcac 4030786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 263
Target Start/End: Complemental strand, 24547062 - 24546886
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacac---aatttacaatagactcacaac 189  Q
    |||||||  ||||||||||| | ||||||| ||||||||| ||||| | ||||| |||||||||||| |||||| |   ||| |||||| ||||||  |     
T  24547062 ttttttgtcaaaaccgttaactgttgccacatgtcacttaagattgataatcaatggttggatttaataagcactcacaaatatacaatggactcaatat 24546963  T
Q  190 atatgatcatt--tataatctttccttgtttgtcttgaacttcct-aaattaaaaatcaccaacaatcttcatcttc 263  Q
    ||||||| |||  ||| || ||||||| ||| |||| || ||| | |||||||||||||| || |||||||| ||||    
T  24546962 atatgataatttctattatatttccttatttttctttaatttcttaaaattaaaaatcacaaataatcttcaccttc 24546886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 16269587 - 16269536
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaa 170  Q
    |||||||| | ||| ||||||||||||||||||||||||| ||||| |||||    
T  16269587 ccacgtgtaatttaagattggtgatcaagggttggatttagaaagcgcacaa 16269536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 17358980 - 17359023
Alignment:
Q  154 atttaaaaagcacacaatt-tacaatagactcacaacatatgat 196  Q
    ||||||||||||||||||| |||||| |||||||||||||||||    
T  17358980 atttaaaaagcacacaattatacaattgactcacaacatatgat 17359023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 3171114 - 3171047
Alignment:
Q  28 ttgtagtaaattctttgtttagtattgcttgtataatttagtggtgggtgcgttcatggggaatgttt 95  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  3171114 ttgtagtaaattctttgtttagtattacttgtataatttagtggtgggtgcgttcacggggaatgttt 3171047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 27750590 - 27750541
Alignment:
Q  120 cacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  27750590 cacgtgtcagttaagattggtgatcaacggttggatttaaaaagcacaca 27750541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 3237563 - 3237613
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||||||| ||| |||||||||||||  |||||||||||||||||||||    
T  3237563 ccacgtgtcagttaagattggtgatcaacagttggatttaaaaagcacaca 3237613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 38589967 - 38590016
Alignment:
Q  120 cacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    ||||||||| ||| ||||||||||||| ||||| ||||||||||||||||    
T  38589967 cacgtgtcatttaagattggtgatcaacggttgaatttaaaaagcacaca 38590016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 8096529 - 8096451
Alignment:
Q  124 tgtcacttaggattggtgatcaagggttggatttaaaaagcacac-aatttacaatagactcacaacatatgatcattt 201  Q
    ||||| ||| ||||||||||||| || |||||||| ||||||| | ||| ||||||| |||| ||||| ||||||||||    
T  8096529 tgtcatttaagattggtgatcaatggctggatttagaaagcacgcaaatatacaataaactcgcaacacatgatcattt 8096451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 31624052 - 31624102
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||||||||||| ||||| ||||||| ||||||||| | ||||||||||    
T  31624052 ccacgtgtcacttaagattgatgatcaacggttggattaataaagcacaca 31624102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 38665712 - 38665667
Alignment:
Q  233 aaattaaaaatcaccaacaatcttcatcttcttccctcttcatctc 278  Q
    |||||||||||||||| |||||||||||||| | ||||| ||||||    
T  38665712 aaattaaaaatcaccatcaatcttcatcttccttcctctccatctc 38665667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 45385653 - 45385608
Alignment:
Q  233 aaattaaaaatcaccaacaatcttcatcttcttccctcttcatctc 278  Q
    |||||||||||||| | |||| ||||||||||| ||||||||||||    
T  45385653 aaattaaaaatcactatcaatattcatcttctttcctcttcatctc 45385608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 11431461 - 11431385
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    ||||||| |||||| ||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| ||||    
T  11431461 ttttttgttaaaactgttaagtcttgccacatgtcacttaggattggtgattaatggttggatttaaaaagcgcaca 11431385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 1663334 - 1663384
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||||| | ||| ||| ||||||||| ||||||||||||||||||||||    
T  1663334 ccacgtgttagttaagatcggtgatcaacggttggatttaaaaagcacaca 1663384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 4567120 - 4567180
Alignment:
Q  142 atcaagggttggatttaaaaagcacacaatt-tacaatagactcacaacatatgatcattt 201  Q
    |||||||||| ||||||||||| ||| || | |||||| |||||||||||||| |||||||    
T  4567120 atcaagggttagatttaaaaagtacataagtatacaatggactcacaacatataatcattt 4567180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 15269088 - 15269012
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||| | ||||||||||| ||||||||| ||||| ||| |||||||||||||||||| ||||| |||||||||||    
T  15269088 ttttttacaaaaaccgttaactcttgccacatgtcatttatgattggtgatcaagggttagatttgaaaagcacaca 15269012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 18342863 - 18342965
Alignment:
Q  97 ttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaa---gcacacaatttacaatagactcacaacatat 193  Q
    |||||||||| |||||  ||||||| ||||||||| |||||| |||| || |||||||||||||||    ||||||||||| ||| ||||| ||||||||    
T  18342863 ttgctaaaactgttaacccttgccatgtgtcacttgggattgatgattaaaggttggatttaaaaaagcacacacaatttagaatggactctcaacatat 18342962  T
Q  194 gat 196  Q
    |||    
T  18342963 gat 18342965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 41312647 - 41312730
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca-atttacaatagactcacaacatatgatcattt 201  Q
    |||| ||||| ||| |||||||||||||||||| ||||| ||||| |||||  | |||||| |||||||||||||| |||||||    
T  41312647 ccacatgtcatttaagattggtgatcaagggttagatttgaaaagtacacaggtatacaatggactcacaacatataatcattt 41312730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 18343886 - 18343824
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggat 155  Q
    ||||||||||||||||||||   |||| | ||||||||||  |||||||||||||||||||||    
T  18343886 ttttttgctaaaaccgttaacctttgctatgtgtcacttaaaattggtgatcaagggttggat 18343824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 3665371 - 3665454
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaatt-tacaatagactcacaacatatgatcattt 201  Q
    |||| ||||| ||| |||||||||||||||  | ||||| ||||| |||||| | |||||||| |||||||||||| |||||||    
T  3665371 ccacatgtcatttaagattggtgatcaaggactagatttgaaaagtacacaagtatacaataggctcacaacatataatcattt 3665454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 6209035 - 6208984
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaa 170  Q
    |||| ||||| ||| |||||||||||||||||| ||||||||||| ||||||    
T  6209035 ccacatgtcatttaagattggtgatcaagggttagatttaaaaagtacacaa 6208984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 14510494 - 14510415
Alignment:
Q  123 gtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaatt-tacaatagactcacaacatatgatcattt 201  Q
    |||||| ||| ||||| ||||||| |  |||||||| ||||||||||| | ||||||  |||||||||||||||||||||    
T  14510494 gtgtcatttaagattgatgatcaatgactggatttagaaagcacacaaatatacaatgcactcacaacatatgatcattt 14510415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 33836916 - 33836999
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaa-tttacaatagactcacaacatatgatcattt 201  Q
    |||| ||||| ||| |||||||||||||||| | ||||| ||||| |||||| | |||||| | |||||||||||| |||||||    
T  33836916 ccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatgggctcacaacatataatcattt 33836999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 42246737 - 42246820
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca-atttacaatagactcacaacatatgatcattt 201  Q
    |||||| ||||||| ||| | ||||||||||||||||||| ||||| |||| || |||||   |||||||||||||||| ||||    
T  42246737 ccacgtatcacttaagatggatgatcaagggttggatttagaaagcgcacatatatacaacgaactcacaacatatgattattt 42246820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 265
Target Start/End: Original strand, 15268524 - 15268683
Alignment:
Q  116 ttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaatt---tacaatagactcacaacatatgatcatttata--atc-tt 209  Q
    ||||||||||||| ||  |||||||||||||||| || |||| |||| ||||||      |||||||||||||||||||||||| |||| ||  ||| ||    
T  15268524 ttgccacgtgtcatttgtgattggtgatcaagggctgaattttaaaaacacacacaaggatacaatagactcacaacatatgataatttttattatcatt 15268623  T
Q  210 tccttgtttgtcttgaacttccta------aattaaaaatcaccaacaatcttcatcttctt 265  Q
    | |||  |||||||||| ||| ||      |||||||||||| |||||||||||||||||||    
T  15268624 ttctt--ttgtcttgaatttcttatcttaaaattaaaaatcatcaacaatcttcatcttctt 15268683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 30223950 - 30223863
Alignment:
Q  115 cttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaa-tttacaatagactcacaacatatgatcattt 201  Q
    |||||||| ||||| ||| |||||||||||||||| | ||||| ||||| |||||| | |||||| |||||||||||||| |||||||    
T  30223950 cttgccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatggactcacaacatataatcattt 30223863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 22061769 - 22061715
Alignment:
Q  115 cttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||||||||||| ||| |||||| |||||| ||||||||||||||||||||||    
T  22061769 cttgccacgtgtcatttaagattggggatcaacggttggatttaaaaagcacaca 22061715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 35128162 - 35128112
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  35128162 ccacgtgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 35128112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 30222788 - 30222875
Alignment:
Q  115 cttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaa-tttacaatagactcacaacatatgatcattt 201  Q
    |||||||| ||||| ||| |||||||||||||||  | ||||| ||||| |||||| | |||||| |||||||||||||| |||||||    
T  30222788 cttgccacatgtcatttaagattggtgatcaaggactagatttgaaaagtacacaagtatacaatggactcacaacatataatcattt 30222875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 41126386 - 41126469
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaa-tttacaatagactcacaacatatgatcattt 201  Q
    |||| ||||| ||| |||||||||||||||| | ||||| ||||| |||||| | |||||||| |||||||||||| |||||||    
T  41126386 ccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaataggctcacaacatataatcattt 41126469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 22060609 - 22060659
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca 169  Q
    ||||| |||| ||| ||||||||||||| ||||||||||||||||||||||    
T  22060609 ccacgagtcatttaagattggtgatcaacggttggatttaaaaagcacaca 22060659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 48754116 - 48754185
Alignment:
Q  93 ttttttgctaaaaccgttaagtcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaa 162  Q
    |||||||| ||| ||||||| || | ||||||||| |||| ||||||||||||| || ||||||||||||    
T  48754116 ttttttgcaaaatccgttaactccttccacgtgtcccttaagattggtgatcaacggctggatttaaaaa 48754185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 41618453 - 41618385
Alignment:
Q  134 gattggtgatcaagggttggatttaaaaagcacacaa-tttacaatagactcacaacatatgatcattt 201  Q
    |||||||||||||||||| ||||| ||||| |||||| | |||||| | |||||||||||| |||||||    
T  41618453 gattggtgatcaagggttagatttgaaaagtacacaagtatacaatgggctcacaacatataatcattt 41618385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 33458456 - 33458534
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacac-aatttacaatagactcacaacatatgat 196  Q
    |||||||||| ||| |||| ||||||||||| ||||||||  |||| ||| ||| |||||| |||| ||||||||||||    
T  33458456 ccacgtgtcatttaagattagtgatcaagggctggatttagtaagcgcacaaatatacaatggacttacaacatatgat 33458534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 36673805 - 36673719
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaatt-tacaatagactcacaacatatgatcatttata 204  Q
    |||| ||||| ||| |||||||||||||||| | | ||| ||||| |||||| | |||||| | |||||||||||| ||||||||||    
T  36673805 ccacatgtcatttaagattggtgatcaagggctaggtttgaaaagtacacaagtatacaatgggctcacaacatataatcatttata 36673719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 48754253 - 48754298
Alignment:
Q  233 aaattaaaaatcaccaacaatcttcatcttcttccctcttcatctc 278  Q
    |||||||||||||| | |||| ||||||||||| ||||||||||||    
T  48754253 aaattaaaaatcactatcaatattcatcttctttcctcttcatctc 48754298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 2234 - 2151
Alignment:
Q  119 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca-atttacaatagactcacaacatatgatcattt 201  Q
    |||||||||||||| ||| | ||||||||||||||||||| | ||| |||| || ||||||  ||||| |||||||||| ||||    
T  2234 ccacgtgtcacttaagatggatgatcaagggttggatttagagagcgcacatatatacaatgaactcaaaacatatgattattt 2151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University