View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17992_high_21 (Length: 288)
Name: NF17992_high_21
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_high_21 |
 | |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0068 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0530 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 32094890 - 32095159
Alignment:
| Q |
19 |
taaggttaaaggaaaattgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatggaaaaa |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32094890 |
taaggttaaaggaaaattgagagaagtggctcttaaactttatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatggaaaaa |
32094989 |
T |
|
| Q |
119 |
tgggattttctccacaatggattatgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagagg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
32094990 |
tgggattttctccacaatggattatgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattttaggtagagg |
32095089 |
T |
|
| Q |
219 |
tttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggatatccgcattgatt |
288 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
32095090 |
tttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgatt |
32095159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 15948724 - 15948770
Alignment:
| Q |
226 |
caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagg |
272 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| ||||||| ||||| |
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|
| T |
15948724 |
caaggtgaccctttgtcaccatatttgtttattctttgtgctgaagg |
15948770 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 36 - 278
Target Start/End: Complemental strand, 46390184 - 46389941
Alignment:
| Q |
36 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
134 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||||| | ||||| |||||||| ||||||| ||| |
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|
| T |
46390184 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgagaggttatggataaaatgggcttttctcaaca |
46390085 |
T |
|
| Q |
135 |
atggattatgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgac |
234 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||||| |||||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||| |
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|
| T |
46390084 |
atggataatggtgtgtgtcgaaactgtcgactattctattcttgtcaatggtaacgtcacgggacctatcattcctggtagaggcttgaggcaaggtgat |
46389985 |
T |
|
| Q |
235 |
cctctgtcaccatatttgttcattatttgtgcagaagggatatc |
278 |
Q |
| |
|
|| | ||||| | ||||| ||||| |||||||||||| |||| |
|
|
| T |
46389984 |
ccattatcaccgcacttgtttattatatgtgcagaagggctatc |
46389941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 36 - 278
Target Start/End: Original strand, 48211263 - 48211515
Alignment:
| Q |
36 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
134 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||| | | ||||| |||||||| |||||| ||| |
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|
| T |
48211263 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgacaggttatggataaaatgggcttttctgaaca |
48211362 |
T |
|
| Q |
135 |
atggatta---------tgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgagg |
225 |
Q |
| |
|
|||||| | ||| |||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||| |||||||| |||||| |
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|
| T |
48211363 |
atggataaagtggataatgtcgtgtgtcgaaactgttgactattttgttcttgtcaatggtaatgtcacgggacctatcattcctggtagaggcttgagg |
48211462 |
T |
|
| Q |
226 |
caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggatatc |
278 |
Q |
| |
|
|||||||| || | ||||| || ||||| ||||| |||||||||||| |||| |
|
|
| T |
48211463 |
caaggtgatccattatcaccgtacttgtttattatctgtgcagaagggctatc |
48211515 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 36 - 278
Target Start/End: Complemental strand, 11806 - 11554
Alignment:
| Q |
36 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
134 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||| | | ||||| |||||||| |||||| ||| |
|
|
| T |
11806 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgacaggttatggataaaatgggcttttctgaaca |
11707 |
T |
|
| Q |
135 |
atggatta---------tgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgagg |
225 |
Q |
| |
|
|||||| | |||| |||||||||||||| ||||||| |||||||||||||||||| || |||||||| |||||||| |||||||| |||||| |
|
|
| T |
11706 |
atggataaagtggataatgttgtgtgtcgaaactgttgactattatgttcttgtcaatggtaacgtcacgggacctatcattcctggtagaggcttgagg |
11607 |
T |
|
| Q |
226 |
caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggatatc |
278 |
Q |
| |
|
|||||||| || ||||||| || ||||| |||||||||||||||||| |||| |
|
|
| T |
11606 |
caaggtgatccattgtcaccgtacttgtttattatttgtgcagaagggctatc |
11554 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 36 - 278
Target Start/End: Original strand, 21702104 - 21702356
Alignment:
| Q |
36 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
134 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||| | | ||||| |||||||| |||||| ||| |
|
|
| T |
21702104 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgacaggttatggataaaatgggcttttctgaaca |
21702203 |
T |
|
| Q |
135 |
atggatta---------tgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgagg |
225 |
Q |
| |
|
|||||| | |||| |||||||||||||| ||||||| |||||||||||||||||| || |||||||| |||||||| |||||||| |||||| |
|
|
| T |
21702204 |
atggataaagtggataatgttgtgtgtcgaaactgttgactattatgttcttgtcaatggtaacgtcacgggacctatcattcctggtagaggcttgagg |
21702303 |
T |
|
| Q |
226 |
caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggatatc |
278 |
Q |
| |
|
|||||||| || ||||||| || ||||| |||||||||||||||||| |||| |
|
|
| T |
21702304 |
caaggtgatccattgtcaccgtacttgtttattatttgtgcagaagggctatc |
21702356 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 135 - 278
Target Start/End: Complemental strand, 23266551 - 23266409
Alignment:
| Q |
135 |
atggattatgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgac |
234 |
Q |
| |
|
|||||||||||| ||||| ||||| || ||||||| |||||||||||||||||||||||| || || || ||||| | ||||| || ||||||||||| |
|
|
| T |
23266551 |
atggattatgttgtgtgtggaaaccgttgactattttgttcttgtcaatggtaatgttactggtcctattattcc-tgcagaggcttacggcaaggtgac |
23266453 |
T |
|
| Q |
235 |
cctctgtcaccatatttgttcattatttgtgcagaagggatatc |
278 |
Q |
| |
|
||| ||||||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
23266452 |
cctttgtcaccgtatttgtttattatttgtgcagaagggttatc |
23266409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 23266657 - 23266593
Alignment:
| Q |
38 |
ggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcg |
102 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||| || || | ||||||||||||||| ||||| |
|
|
| T |
23266657 |
ggagaagtggctctgaaacttgatattagcaaagcatatgacaaaattgagtggaactatcttcg |
23266593 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 272
Target Start/End: Complemental strand, 205361 - 205223
Alignment:
| Q |
134 |
aatggattatgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtga |
233 |
Q |
| |
|
|||||||| || | ||||| ||||| || ||||||||| | || ||||||||||||||||| ||||| || ||||| |||||||| |||||||| || || |
|
|
| T |
205361 |
aatggattgtgctgtgtgttgaaaccgttgactattctatactagtcaatggtaatgttactggacctattattcctggtagaggcttgaggcagggaga |
205262 |
T |
|
| Q |
234 |
ccctctgtcaccatatttgttcattatttgtgcagaagg |
272 |
Q |
| |
|
||| | ||||||||| | || ||||||||||||||||| |
|
|
| T |
205261 |
ccccttatcaccatatctttttattatttgtgcagaagg |
205223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 134 - 272
Target Start/End: Original strand, 22907932 - 22908070
Alignment:
| Q |
134 |
aatggattatgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtga |
233 |
Q |
| |
|
||||||||||| | ||||| ||||| || || || | ||| |||||||||||||||| ||| | || ||||||||||| |||||||| || ||||| || |
|
|
| T |
22907932 |
aatggattatgatgtgtgttgaaacagtggattactatgtgcttgtcaatggtaatgctacaagtccaatcattccaggaagaggtttaagacaaggaga |
22908031 |
T |
|
| Q |
234 |
ccctctgtcaccatatttgttcattatttgtgcagaagg |
272 |
Q |
| |
|
||| || || ||||||||||| ||||||||||| ||||| |
|
|
| T |
22908032 |
cccactatccccatatttgtttattatttgtgctgaagg |
22908070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 12352839 - 12352800
Alignment:
| Q |
234 |
ccctctgtcaccatatttgttcattatttgtgcagaaggg |
273 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
12352839 |
ccctctgtcaccatatttgtacattatttgtgctgaaggg |
12352800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 34233064 - 34233031
Alignment:
| Q |
212 |
gtagaggtttgaggcaaggtgaccctctgtcacc |
245 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
34233064 |
gtaggggtttgaggcaaggtgaccctctgtcacc |
34233031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 21502955 - 21503031
Alignment:
| Q |
205 |
attccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggatatccgc |
281 |
Q |
| |
|
||||| |||||||| |||||||| || |||||| | ||||| ||| | || ||||||||||||||||| ||||||| |
|
|
| T |
21502955 |
attcctggtagaggcttgaggcagggagaccctttatcaccgtatctttttattatttgtgcagaaggtttatccgc |
21503031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 152 - 278
Target Start/End: Original strand, 33347860 - 33347986
Alignment:
| Q |
152 |
tcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatattt |
251 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||| || | || || || || ||||||||||| ||||| |||||||||||||| ||||| ||| | |
|
|
| T |
33347860 |
tcgaaactgttgattattctgttcttgtcaacggtaatattgctggtccgattataccaggtagagggttgagacaaggtgaccctctttcaccttatct |
33347959 |
T |
|
| Q |
252 |
gttcattatttgtgcagaagggatatc |
278 |
Q |
| |
|
|| || || |||||||||||| |||| |
|
|
| T |
33347960 |
ctttatcatatgtgcagaagggttatc |
33347986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 26383522 - 26383429
Alignment:
| Q |
152 |
tcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcacc |
245 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| |||| || | || || || || ||||||||||| ||||| ||| |||||||||| ||||| |
|
|
| T |
26383522 |
tcgaaactgttgattattctgttcttgtcaatgataatattgctggtccgattataccaggtagagggttgagacaatgtgaccctctttcacc |
26383429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0530 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0530
Description:
Target: scaffold0530; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 9733 - 9779
Alignment:
| Q |
226 |
caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagg |
272 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
9733 |
caaggtgaccctttgtcaccatatttgtttattctttgtgctgaagg |
9779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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