View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17992_high_22 (Length: 288)
Name: NF17992_high_22
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 50459871 - 50459723
Alignment:
| Q |
11 |
caaaggttagatttggaaagataatggacaggaaagtgcattaaactcaattggtgttagcataataggatgttttaaacatatatgatcttttttcatg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50459871 |
caaaggttagatttggaaagataatggacaggaaagtgcattaaactcaattggtgttagcataataggatgttttaaacatatatgatcttatttcatg |
50459772 |
T |
|
| Q |
111 |
actcaccagatcaaaagaataacttaatttatgaatgaagccatggctc |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50459771 |
actcaccagatcaaaagaataacttaatttatgaatgaagccatggctc |
50459723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 50459677 - 50459609
Alignment:
| Q |
205 |
ggtattaagcatgttcactcaccatgattgaaagtttctgcaattgaggaaaagtttgaaggatgttga |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50459677 |
ggtattaagcatgttcactcaccatgattgaaagtttctgcaattgaggaaaagtttgaaggatgttga |
50459609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 47051333 - 47051390
Alignment:
| Q |
214 |
catgttcactcaccatgattgaaagtttctgcaattgaggaaaagtttgaaggatgtt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||| |
|
|
| T |
47051333 |
catgttcactcaccatgattgaaagtttctgcaaaagaggagaagcttgaagcatgtt |
47051390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University