View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17992_high_28 (Length: 273)
Name: NF17992_high_28
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 7820387 - 7820136
Alignment:
| Q |
1 |
atcacagatggcaaggttattagaaatttaaaaaagcccttattaagcaccaaaccatggttgaggatgagaatctttcnnnnnnncaatggttgaggat |
100 |
Q |
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| T |
7820387 |
atcacatatggcaaggttattagaaatttaaaaaagcctttattaagcaccaaaccatggttgaggatgagaatctttcaaaaaat-aatggttgaggat |
7820289 |
T |
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| Q |
101 |
gagaatggcttcgatggaggagagagtgannnnnnnaacgatataaaaccaaaaagaggctctgatcaaat--nnnnnnnnnnccaacaagaggcaaccg |
198 |
Q |
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| T |
7820288 |
gagaatggcttcgatggaggagagagtgatttttttaacgatataaaaccaaaaagaggctctgaccaaataaaaaaaaaaaaccaacaagaggcaaccg |
7820189 |
T |
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| Q |
199 |
gatatacatagtcaaatatagaggttcatgtgtggacccttataattagagaccatatt |
257 |
Q |
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| T |
7820188 |
aatatgcatagtcaaatatagaggttc------ggacccttataattagagaccatatt |
7820136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7802680 - 7802453
Alignment:
| Q |
1 |
atcacagatggcaaggttattagaaatttaaaaaagccctta----ttaagcaccaaaccatggttgaggatgagaatctttcnnnnnnncaatggttga |
96 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7802680 |
atcacagatggcaaggttattagaaatttaaaaaagtccttacttattaagcaccaaaccatggttgaggatgagaatctttc-aaaaaacaatggttga |
7802582 |
T |
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| Q |
97 |
ggatgagaatggcttcgatggaggagagagtgannnnnnnaacgatataaaaccaaaaagaggctctgatcaaatnnnnnnnnnnccaacaagaggcaac |
196 |
Q |
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| T |
7802581 |
ggatgagaatggcttcgatggaggagagagtgatttttttaacgatataaaaccaaaaagaggctctgaccaaat--aaaaaaaaccaacaagaggcaac |
7802484 |
T |
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| Q |
197 |
cggatatacatagtcaaatatagaggttcat |
227 |
Q |
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| T |
7802483 |
cggatatacatagtcaaatatagaggttcat |
7802453 |
T |
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