View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17992_high_32 (Length: 251)
Name: NF17992_high_32
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_high_32 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 32095411 - 32095170
Alignment:
| Q |
10 |
aagaatattcactatattattatgatcagcccttgaaacattcctgctacaaaaaatttccgacttttggagattaaccgcttgacctgacgctttctca |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32095411 |
aagaatattcgctatattattatgatcagcccttgaaacattcctgctacaaaaaaattccgacttttggagattgaccgcttgacctgacgctttctca |
32095312 |
T |
|
| Q |
110 |
taaatggataaaatacttctcattttcagtgcttgatttgaagtagcacggaaaaataaaaagcaatcatatgcgaagagaagatgcaaaatgattggaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095311 |
taaatggataaaatacttctcattttcagtgcttgatttgaagtagcacggaaaaataaaaagcaatcatatgcgaagagaagatgcaaaatgattggag |
32095212 |
T |
|
| Q |
210 |
cattgttgcagatttttgctccattgatttcacctctagctt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095211 |
cattgttgcagatttttgctccattgatttcacctctagctt |
32095170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 204965 - 205101
Alignment:
| Q |
21 |
ctatattattatgatcagcccttgaaacattcctgctacaaaaaatttccgacttttggagattaaccgcttgacctgacgctttctcataaatggataa |
120 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||| | ||| ||||||| |||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
204965 |
ctatattattatgatcagctgttgaaacatttctgctacaaaagacttctgactttttgagattaaccgcttgacctgacgctttctcataagttgatag |
205064 |
T |
|
| Q |
121 |
aatacttctcattttcagtgcttgatttgaagtagca |
157 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||| |
|
|
| T |
205065 |
aatatttctcattttcaaagcttgatttgaagtagca |
205101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 21503279 - 21503132
Alignment:
| Q |
21 |
ctatattattatgatcagcccttgaaacattcctgctacaaaaaatttccgacttttggagattaaccgcttgacctgacgctttctcataaatggataa |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| | |||| |
|
|
| T |
21503279 |
ctatattattatgatcagttgttgaaacatttctgctacaaaagatttatgacttttggagattaaccgcttgacctgacactttctcataagttgatag |
21503180 |
T |
|
| Q |
121 |
aatacttctcattttcagtgcttgatttgaagtagcacggaaaaataa |
168 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||| | |||||||| |
|
|
| T |
21503179 |
aatatttctcattttcaaagcttgatttgaagtagcatgaaaaaataa |
21503132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 4569582 - 4569518
Alignment:
| Q |
71 |
gacttttggagattaaccgcttgacctgacgctttctcataaatggataaaatacttctcatttt |
135 |
Q |
| |
|
||||||||||||||| | ||| || |||| || |||||||||||||||||||| || ||||||| |
|
|
| T |
4569582 |
gacttttggagattagcgtcttaacatgacactctctcataaatggataaaatatttttcatttt |
4569518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 46389690 - 46389827
Alignment:
| Q |
21 |
ctatattattatgatcagcccttgaaacattcctgctacaaaaaatttccgacttttggagattaaccgcttgacctgacgctttctcataaatggataa |
120 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || || |
|
|
| T |
46389690 |
ctatattattatgatcaaccgatgaaacattcctgctacaaaaaatttatgacttttggagattaacagcttgacctgacgctttctcataaactgacaa |
46389789 |
T |
|
| Q |
121 |
aatacttctcattttcagtgcttgatttgaagtagcac |
158 |
Q |
| |
|
|||| |||||||||| ||||||| || ||| |||||| |
|
|
| T |
46389790 |
aatatttctcattttttgtgcttggttcgaattagcac |
46389827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 48211766 - 48211652
Alignment:
| Q |
21 |
ctatattattatgatcagcccttgaaacattcctgctacaaaaaatttccgacttttggagattaaccgcttgacctgacgctttctcataaatggataa |
120 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| || | |
|
|
| T |
48211766 |
ctatatttttatgatcagctggtgaaacattcctgctacaaaaaaattctgacttttggagattaacagcttgacctgacgctttctcataaactgacag |
48211667 |
T |
|
| Q |
121 |
aatacttctcatttt |
135 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
48211666 |
aatatttctcatttt |
48211652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 7158 - 7320
Alignment:
| Q |
21 |
ctatattattatgatcagcccttgaaacattcctgctacaaaaaatttccgacttttggagattaaccgcttgacctgacgctttctcataaatggataa |
120 |
Q |
| |
|
||||||||||||||||||| ||||| |||| |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| || | |
|
|
| T |
7158 |
ctatattattatgatcagctggtgaaaaattcttgctacaatttttttttgacttttggagattaacatcttgacctgacgctttctcataaactgacag |
7257 |
T |
|
| Q |
121 |
aatacttctcattttcagtgcttgatttgaagtagcacggaaaaataaaaagcaatcatatgc |
183 |
Q |
| |
|
|||| |||||||||| ||||||| || ||| ||||||| ||||| || ||||| |||||||| |
|
|
| T |
7258 |
aatatttctcattttttgtgcttggttcgaattagcacgaaaaaacaagaagcagtcatatgc |
7320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 21706752 - 21706590
Alignment:
| Q |
21 |
ctatattattatgatcagcccttgaaacattcctgctacaaaaaatttccgacttttggagattaaccgcttgacctgacgctttctcataaatggataa |
120 |
Q |
| |
|
||||||||||||||||||| ||||| |||| |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| || | |
|
|
| T |
21706752 |
ctatattattatgatcagctggtgaaaaattcttgctacaatttttttttgacttttggagattaacatcttgacctgacgctttctcataaactgacag |
21706653 |
T |
|
| Q |
121 |
aatacttctcattttcagtgcttgatttgaagtagcacggaaaaataaaaagcaatcatatgc |
183 |
Q |
| |
|
|||| |||||||||| ||||||| || ||| ||||||| ||||| || ||||| |||||||| |
|
|
| T |
21706652 |
aatatttctcattttttgtgcttggttcgaattagcacgaaaaaacaagaagcagtcatatgc |
21706590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 16983747 - 16983697
Alignment:
| Q |
71 |
gacttttggagattaaccgcttgacctgacgctttctcataaatggataaa |
121 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
16983747 |
gactttttaagattaaccgcttgacctgaagctttctcataagtggataaa |
16983697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 23266163 - 23266388
Alignment:
| Q |
26 |
ttattatgatcagcccttgaaacattcctgctacaaaaaatttccgacttttggagattaaccgcttgacctgacgctttctcataaatggataaaatac |
125 |
Q |
| |
|
|||||||||||||| ||| |||||||| ||| ||||| ||||| |||||||| || || | ||||||||||| || |||| |||||| ||||||||| |
|
|
| T |
23266163 |
ttattatgatcagcagttggaacattccggctgcaaaatatttcagacttttgaaggttgatagcttgacctgatgccttcttataaatagataaaatat |
23266262 |
T |
|
| Q |
126 |
ttctcattttcagtgcttgatttgaagtagcacggaaaaataaaaagcaatcatatgcgaagagaagatgcaaaatgattggaacattgttgcagatttt |
225 |
Q |
| |
|
|||||||||| |||| | ||| ||||| |||||||| ||||| |||| ||| ||||| ||||| ||||||| || |||||||||||||||| |
|
|
| T |
23266263 |
ccctcattttcaaatcttgcctctgagttgcacgaaaaaataagaagcagtcatctgcaaagaggagatgtgaaatgataggcgcattgttgcagatttt |
23266362 |
T |
|
| Q |
226 |
tgctccattgatttcacctctagctt |
251 |
Q |
| |
|
| ||||| || ||||||||||||| |
|
|
| T |
23266363 |
aaccccattaatatcacctctagctt |
23266388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 10982895 - 10982965
Alignment:
| Q |
161 |
aaaaataaaaagcaatcatatgcgaagagaagatgcaaaatgattggaacattgttgcagatttttgctcc |
231 |
Q |
| |
|
||||||| ||||||||||| ||| ||||| |||||| |||| |||||| |||| ||||||||||| ||||| |
|
|
| T |
10982895 |
aaaaatagaaagcaatcatctgcaaagagcagatgcgaaataattggagcattattgcagattttagctcc |
10982965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University