View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17992_high_7 (Length: 476)
Name: NF17992_high_7
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 467
Target Start/End: Original strand, 32371748 - 32372198
Alignment:
| Q |
17 |
aattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggccaagtttacgagcccagcaacccatacaagttggctcgccaacataa |
116 |
Q |
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||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
32371748 |
aattgtatttatatcatggttaaaaagcttgcaagtcagcttgtagacttggccaagtttacgagcccagcaacccatacaagttggctcacgaacatat |
32371847 |
T |
|
| Q |
117 |
tcgttttctggacagatgcgagaaaagctcacgattatggagttcgaannnnnnnctaaaaaagcccaaatcgcagtaccgcctcacagtttattgaatt |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32371848 |
tcgttttctggacagatgcgagaaaaactcacgattatggagttcgaatttttttctaaaaaagcccaaatcgcagtaccgcctcacagtttattgaatt |
32371947 |
T |
|
| Q |
217 |
ctaagagttgtatcctaatatcttctctaatctctagtctttgtgtttctcttaaatctctgtgtgatactgttgctttgtgtcatctctggctttcgtc |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32371948 |
ctaagagttgtatcctaatatcttctctaatctctagtctttgtgtttctcttacatctctgtgtgacactgttgctttgtgtcatctctggctttcgtc |
32372047 |
T |
|
| Q |
317 |
tcagacgagttgcactgtgttttttcggccttctcttgtgttcgcatgtcaggtttgtggtcctcttctcttttttcgtttgtctggtttgcaatgcttt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32372048 |
tcagacgagttgcactgtgttttttcggccttctcttgtgttcgcatgtcaggtttgtggtcctcttctcttttttcgtttgtctggtttgcaatgcttt |
32372147 |
T |
|
| Q |
417 |
gtccagtctgatatgttcctcttttctattttgtctggctctgtgctgctc |
467 |
Q |
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|||||||||||| |||||||||||||||||||| |||||| |||| ||||| |
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| T |
32372148 |
gtccagtctgatgtgttcctcttttctattttgcctggctgtgtgatgctc |
32372198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 32365093 - 32364989
Alignment:
| Q |
17 |
aattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggccaagtttacgagcccagcaacccatacaagttggctcgccaacataa |
116 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| ||||| ||||||| |
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| T |
32365093 |
aattgtatttatatcatggttagcaaactcgcaagtcagctcgtagagttggccaagtttacgagtccagctacccatacaagttgactcgcgaacataa |
32364994 |
T |
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| Q |
117 |
tcgtt |
121 |
Q |
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||||| |
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| T |
32364993 |
tcgtt |
32364989 |
T |
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