View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17992_low_1 (Length: 719)
Name: NF17992_low_1
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_low_1 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0003 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 19 - 719
Target Start/End: Original strand, 24493499 - 24494199
Alignment:
| Q |
19 |
caaaccacaccaccattggagcgcatatcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagccaaacaaaaagt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493499 |
caaaccacaccaccattggagcgcatatcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagccaaacaaaaagt |
24493598 |
T |
|
| Q |
119 |
atttgttggtcacaaaacatcctttaccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggcgtgccgccatggcatcaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24493599 |
atttgttggtcacaaaacatcctttaccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggtgtgccgccatggcatcaga |
24493698 |
T |
|
| Q |
219 |
atttaatgcattgatgcaacaggggacttgggatctagttccgaaaaacacagcgtctaatctcattggatgtaagtgggtgtttcgggtgaaacgtcgg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493699 |
atttaatgcattgatgcaacaggggacttgggatctagttcctaaaaacacagcgtctaatctcattggatgtaagtgggtgtttcgggtgaaacgtcgg |
24493798 |
T |
|
| Q |
319 |
ccagacggctccattgatagatacaaggcacgtctagtcgcgaaaggatttcatcaacgtcctggactagattatgatcaaacattcagtcctgtggtta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24493799 |
ccagacggctccattgatagatacaaggcacgtctagtcgcgaaaggatttcatcaacgtcctggactagattatgatcaaacattcagtcctgtgatta |
24493898 |
T |
|
| Q |
419 |
agccttcaacagttcggttggttcttacattggccattcaacaacgctggcacattcaccagttggatgtaaacaatgcgttcttgcatggtaagctttc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493899 |
agccttcaacagttcggttggttcttacattggccattcaacaacgctggcacattcaccagttggatgtaaacaatgcgttcttgcatggtaagctttc |
24493998 |
T |
|
| Q |
519 |
agaaactgtatacatgcaacaaccaccgggatttcatcatccagattaccctaatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcc |
618 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493999 |
agaaattgtatacatgcaacaaccaccgggatttcatcatccagattaccctaatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcc |
24494098 |
T |
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| Q |
619 |
cctcgggcatggtttaacaccttacattctttcttactctcctatgggtttgtcaattccaaatctgatccatcattattcatctatctcaaaggtgatg |
718 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494099 |
cctcgggcatggtttaacaccttacattctttcttactctcctatgggtttgtcaattccaaatctgatccatcattattcatctatctcaaaggtgatg |
24494198 |
T |
|
| Q |
719 |
t |
719 |
Q |
| |
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| |
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| T |
24494199 |
t |
24494199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 523; Significance: 0; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 145 - 719
Target Start/End: Original strand, 92975 - 93549
Alignment:
| Q |
145 |
ccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggcgtgccgccatggcatcagaatttaatgcattgatgcaacagggga |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92975 |
ccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggagtgccgccatggcatcagaatttaatgcattgatgcaacagggga |
93074 |
T |
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| Q |
245 |
cttgggatctagttccgaaaaacacagcgtctaatctcattggatgtaagtgggtgtttcgggtgaaacgtcggccagacggctccattgatagatacaa |
344 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
93075 |
cttgggatctagttccaaaaaacacagcgtctaatctcattggatgtaagtgggtgtttcgggtgaaacgtcggccagacggctccattgacagatacaa |
93174 |
T |
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| Q |
345 |
ggcacgtctagtcgcgaaaggatttcatcaacgtcctggactagattatgatcaaacattcagtcctgtggttaagccttcaacagttcggttggttctt |
444 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
93175 |
ggcacgtctagtcgcgaaaggatttcatcaatgtcatggactagattatgatcaaacattcagtcctgcgattaagccttcaacagttcggttggttctt |
93274 |
T |
|
| Q |
445 |
acattggccattcaacaacgctggcacattcaccagttggatgtaaacaatgcgttcttgcatggtaagctttcagaaactgtatacatgcaacaaccac |
544 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93275 |
acattggccattcaacaacgctggcacattcaccagttggatgtaaacaatgtgttcttgcatggtaagctttcagaaactgtatacatgcaacaaccac |
93374 |
T |
|
| Q |
545 |
cgggatttcatcatccagattaccctaatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggtttaacaccttaca |
644 |
Q |
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| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
93375 |
caggatttcatcatctagattaccctaatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggttcaacaccttaca |
93474 |
T |
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| Q |
645 |
ttctttcttactctcctatgggtttgtcaattccaaatctgatccatcattattcatctatctcaaaggtgatgt |
719 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
93475 |
ttctttcttactctcctatggatttgtcaattcaaaatctgatccatcattattcatctatctcaaaggtgatgt |
93549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 92864 - 92951
Alignment:
| Q |
19 |
caaaccacaccaccattggagcgcatatcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
92864 |
caaaccacaccaccattggagcgcatatcaacgtcatcctctgaatatttgagacccatcacacgatccatgcataacatacacaagc |
92951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 204
Target Start/End: Original strand, 92945 - 92976
Alignment:
| Q |
173 |
cacaagcaatggcttcttctgaatggcgtgcc |
204 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
92945 |
cacaagcaatggcttcttctgaatggcgtgcc |
92976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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