View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17992_low_11 (Length: 390)

Name: NF17992_low_11
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17992_low_11
NF17992_low_11
[»] chr6 (3 HSPs)
chr6 (223-373)||(24134014-24134164)
chr6 (289-373)||(24136628-24136711)
chr6 (289-372)||(24134314-24134397)
[»] chr8 (2 HSPs)
chr8 (292-373)||(45149191-45149272)
chr8 (292-369)||(45165556-45165633)
[»] scaffold0290 (2 HSPs)
scaffold0290 (121-160)||(4256-4295)
scaffold0290 (122-158)||(1521-1557)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 223 - 373
Target Start/End: Original strand, 24134014 - 24134164
Alignment:
Q  223 acttacattcgcctttggaaacgttcgactgaaaaatctccaataactgatgaatgggatattacaaagttgtttccctaacacgaaagcagccatacca 322  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||| || |||||||||| ||| |    
T  24134014 acttgcattcgcccttggaaacgttcgactgaaaaatctccaataactgatgggtggtatattacaaagttgtttccctagcatgaaagcagccttacga 24134113  T
Q  323 gcacatgtgctcaaagcaccacataaggtagatctatttaaactttcgccg 373  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24134114 acacatgtgctcaaagcaccacataaggtagatctatttacactttcgccg 24134164  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 24136628 - 24136711
Alignment:
Q  289 aagttgtttccctaacacgaaagcagccataccagcacatgtgctcaaagcaccacataaggtagatctatttaaactttcgccg 373  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| || |||  |||||||||||||||||||||| ||| ||||    
T  24136628 aagtcgtttccctaacaccaaagcagccataccagcacatgtgcttaaggca-aacataaggtagatctatttaaatttttgccg 24136711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 289 - 372
Target Start/End: Original strand, 24134314 - 24134397
Alignment:
Q  289 aagttgtttccctaacacgaaagcagccataccagcacatgtgctcaaagcaccacataaggtagatctatttaaactttcgcc 372  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||  || |||||| ||| |||||  ||||||||||||    
T  24134314 aagttgtttccttaacaccaaagcagccataccagcacatgtgctcaaatgacaacataatgtatatctacataaactttcgcc 24134397  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 45149272 - 45149191
Alignment:
Q  292 ttgtttccctaacacgaaagcagccataccagcacatgtgctcaaagcaccacataaggtagatctatttaaactttcgccg 373  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  45149272 ttgtttccctaacaccaaagcagccataccagcacatgtgctcaaagcacaacaaaaggtagatctatttaaacttttgccg 45149191  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 45165633 - 45165556
Alignment:
Q  292 ttgtttccctaacacgaaagcagccataccagcacatgtgctcaaagcaccacataaggtagatctatttaaactttc 369  Q
    ||||||||| ||| | |||||||| ||| ||||||||||||||||||||| ||  || ||||  ||||||||||||||    
T  45165633 ttgtttccccaactccaaagcagcaatatcagcacatgtgctcaaagcacaaccaaaagtagccctatttaaactttc 45165556  T

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Target: scaffold0290 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 4295 - 4256
Alignment:
Q  121 ccaaaatacccttcgtcttaatcgttcttattctgacact 160  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  4295 ccaaaatacccttcgtcttaaccgttcttattttgacact 4256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 1557 - 1521
Alignment:
Q  122 caaaatacccttcgtcttaatcgttcttattctgaca 158  Q
    |||||||||||||||||||||||||||| || |||||    
T  1557 caaaatacccttcgtcttaatcgttcttcttttgaca 1521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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