View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17992_low_12 (Length: 379)
Name: NF17992_low_12
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 8570382 - 8570012
Alignment:
| Q |
8 |
agagatgaataccctattcctaagaatgcattactttgtggtagggcaactggaagacatactcgacccctttgatgacttacttagctaccacatgaat |
107 |
Q |
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| T |
8570382 |
agagatgaataccctattcctaagaatgcattactttgtggtagggcaactggaagacatactcgacccctttgatgacttacttagctaccacatgaat |
8570283 |
T |
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| Q |
108 |
caaataatacttacttaattagcctttattagaagaatatgatcaaaaaagcagctaccttgtctgcttcttcttttattgttcgattgctttcattaat |
207 |
Q |
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| T |
8570282 |
caa-tattacttacttaattagcctttattagaagaatatgatcaaaaaagcagctaccttgtctgcttcttcttttattgttcgattgctttcattaat |
8570184 |
T |
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| Q |
208 |
tattgatgttgaactataaatgacccctactcgaggtcacattctttctcataagcaaacagaaacaatatattatattccatttataatcttcccaaat |
307 |
Q |
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| T |
8570183 |
tattgatgttgaactataaatgacccctactcgaggtcacattctttctcataagcaaacagaaacaatatattatattccatttataatcttcccaaat |
8570084 |
T |
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| Q |
308 |
tttattattatttgttactaccacacaatactgagtaaaagtaatgagaaacttgaccttggaagagcactc |
379 |
Q |
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| T |
8570083 |
tttattattatttgttaccaccacacaatacagagtaaaagtaatgagaaatttgaccttggaagagcactc |
8570012 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 53748507 - 53748445
Alignment:
| Q |
20 |
cctattcctaagaatgcattactttgtggtagggcaactggaagacatactcgacccctttga |
82 |
Q |
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| T |
53748507 |
cctattccaaagaatgcacgtctttgtggtagggcaagtgggagacatacccgccccctttga |
53748445 |
T |
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