View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17992_low_13 (Length: 332)
Name: NF17992_low_13
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 8e-92; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 34851421 - 34851243
Alignment:
| Q |
1 |
taattttcttgaccaccatagtagattgaagagctgtagtagctaggttccattgtctcattctgataattggtacaagtattcttgttataagagatgc |
100 |
Q |
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| T |
34851421 |
taattttcttgaccaccatagtagattgaagagctgtagtagctaggttccattgtctcattctgataattggtacaagtatttttgttataagagatgc |
34851322 |
T |
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| Q |
101 |
catcactaggagtagtgcctaaaacgaatccaaacataaacattactaaataaatgcagagatatttaaagtagtagtc |
179 |
Q |
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| T |
34851321 |
catcactaggagtagtgcctaaaacgaatccaaacataaacattactaaataaatgcagagatatttaaagcagtagtc |
34851243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 34851203 - 34851127
Alignment:
| Q |
240 |
tttaaaagaattacctgttgctccaagatttttgcttctcacttcttgagttcttgatcctctcccctcaaccttat |
316 |
Q |
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| T |
34851203 |
tttaaaagaattacctgttgctccaagatttttgcttcccacttcttgagttcttgatcctctcccctcaaccttat |
34851127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 3652164 - 3652321
Alignment:
| Q |
12 |
accaccatagtagattgaagagctgtagtagctaggttccattgtctcattctgataattggtacaagtattcttgttataagagatgccatcactagga |
111 |
Q |
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| T |
3652164 |
accaccatagtggattgaagagctgaagtaggtgggttccaccgtctcattctgataatcggtactattagtattcttgttagagatg---tcactatta |
3652260 |
T |
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| Q |
112 |
gtagtgcctaaaacgaatccaaacataaacattactaaataaatgcagagatatttaaagt |
172 |
Q |
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| T |
3652261 |
ggagttcctaaaacaaatccaaacagaaacattacttaagaaatacatacatgtttaaagt |
3652321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 315
Target Start/End: Original strand, 3652473 - 3652540
Alignment:
| Q |
248 |
aattacctgttgctccaagatttttgcttctcacttcttgagttcttgatcctctcccctcaacctta |
315 |
Q |
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| T |
3652473 |
aattacctggtgcttcaagacttttgcttcctacttcttcagttcttgatcctttcccctcaacctta |
3652540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31120836 - 31120764
Alignment:
| Q |
1 |
taattttcttgaccaccatagtagattgaagagctgtagta---gctaggttccattgtctcattctgataat |
70 |
Q |
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| T |
31120836 |
taattttcttgaccaccataatagattgaggaactgtagtaattactgggctccactgtctcattctgataat |
31120764 |
T |
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