View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17992_low_15 (Length: 320)
Name: NF17992_low_15
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 19278248 - 19278553
Alignment:
| Q |
1 |
tcttcaccagtgatcccatgaatgtgcaccacatcctcagcaagaatttcagtaactatgggaaaggatctgacttccatgagattttcgaagttcttgg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
19278248 |
tcttcaccagtgatcccatgaatgtgcaccacatcatcagcaagaatttcagtaactatgggaaaggatctgacttccatgagatttttgaagttctcgg |
19278347 |
T |
|
| Q |
101 |
tcttggtattttcaatttggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaacaaaaacattgagatattctatcaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19278348 |
tcttggtattttcaatttggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaacaaaaacattgagatattctatcaacaa |
19278447 |
T |
|
| Q |
201 |
aacattcaaaagaagctagagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttgatttacaagatgttattgagaagttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19278448 |
aacattcaaaagaagctagagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttgatttacaagatgttattgagaggttta |
19278547 |
T |
|
| Q |
301 |
cctttg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
19278548 |
cctttg |
19278553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 4 - 306
Target Start/End: Original strand, 13243628 - 13243930
Alignment:
| Q |
4 |
tcaccagtgatcccatgaatgtgcaccacatcctcagcaagaatttcagtaactatgggaaaggatctgacttccatgagattttcgaagttcttggtct |
103 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| |||| ||||||||| ||| |||| ||| | |
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|
| T |
13243628 |
tcactagtgatcccatgaatgtgaaccacatcctcagcaaaaaattcagtaactatgggaaaggatctgatttccttgagatttttgaaattctcggtgt |
13243727 |
T |
|
| Q |
104 |
tggtattttcaatttggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaacaaaaacattgagatattctatcaacaaaac |
203 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
13243728 |
tggtattttcaatttggattccaaggaatgggaacaagaaagggcactacttcattcattgctcaaaaccaaaaactttgagatattctatcaacaaaac |
13243827 |
T |
|
| Q |
204 |
attcaaaagaagctagagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttgatttacaagatgttattgagaagtttacct |
303 |
Q |
| |
|
||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |
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|
| T |
13243828 |
attcaaaagaaactagagaattgcctattaccatttcttgatcatgcatccaaagaagtaaaagtacttgatttacaagatgttcttgagaggtttacct |
13243927 |
T |
|
| Q |
304 |
ttg |
306 |
Q |
| |
|
||| |
|
|
| T |
13243928 |
ttg |
13243930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 4 - 306
Target Start/End: Original strand, 13079969 - 13080271
Alignment:
| Q |
4 |
tcaccagtgatcccatgaatgtgcaccacatcctcagcaagaatttcagtaactatgggaaaggatctgacttccatgagattttcgaagttcttggtct |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||| ||| |||||||| | |
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|
| T |
13079969 |
tcaccagtgatcccatgaatgtgcaccacatcactagcaagaatttcagcaactatggaaaaggatctgacttccatgaaatttttgaaattcttggtgt |
13080068 |
T |
|
| Q |
104 |
tggtattttcaatttggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaacaaaaacattgagatattctatcaacaaaac |
203 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| || ||| | ||||||||||||||||||| |||| | |||||||| || ||| ||| | |
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|
| T |
13080069 |
tggtattttcaatttagattctaatgaatggaaacaagagagagcattgtttcattcattgctcaaaaggaaaagctttgagatactccttcatcaatgc |
13080168 |
T |
|
| Q |
204 |
attcaaaagaagctagagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttgatttacaagatgttattgagaagtttacct |
303 |
Q |
| |
|
||| ||| ||| |||||| || | |||||||||||||||||||||||||||| |||| || ||||||||||||||| || |||||| ||| |||| |
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|
| T |
13080169 |
attagaaataagttagagattttcctattaccatttcttgatcatgcatccaaaggagtacaaatacttgatttacaagatattcttgagaggttcacct |
13080268 |
T |
|
| Q |
304 |
ttg |
306 |
Q |
| |
|
||| |
|
|
| T |
13080269 |
ttg |
13080271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 306
Target Start/End: Complemental strand, 13087225 - 13086923
Alignment:
| Q |
4 |
tcaccagtgatcccatgaatgtgcaccacatcctcagcaagaatttcagtaactatgggaaaggatctgacttccatgagattttcgaagttcttggtct |
103 |
Q |
| |
|
|||||||||||| |||||||||| |||||| ||||||||||| || ||||||||||||||| |||| |||||||| ||||| || ||| | ||| | |
|
|
| T |
13087225 |
tcaccagtgatcatttgaatgtgcatcacatcactagcaagaattttagcaactatgggaaaggaactgatttccatgaaatttttgatgttttaggtgt |
13087126 |
T |
|
| Q |
104 |
tggtattttcaatttggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaacaaaaacattgagatattctatcaacaaaac |
203 |
Q |
| |
|
||||||||| |||||||||| | | |||||||||||||| ||| ||||| ||||||||||||||||| |||| ||||||||| || |||||||||| |
|
|
| T |
13087125 |
tggtattttaaatttggatttcgaagaatggaaacaagagaggacactacttcattcattgctcaaagggaaaagttttgagatatcctttcaacaaaac |
13087026 |
T |
|
| Q |
204 |
attcaaaagaagctagagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttgatttacaagatgttattgagaagtttacct |
303 |
Q |
| |
|
|||||||||||||||||||||| | |||| |||||||||||||||||||||| ||| | | ||||||||||||||| || |||||| |||||||| |
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|
| T |
13087025 |
attcaaaagaagctagagaatttcctattacgatttcttgatcatgcatccaaaagtgtacaggtacttgatttacaagatattcttgagaggtttacct |
13086926 |
T |
|
| Q |
304 |
ttg |
306 |
Q |
| |
|
||| |
|
|
| T |
13086925 |
ttg |
13086923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 304
Target Start/End: Original strand, 12962994 - 12963294
Alignment:
| Q |
4 |
tcaccagtgatcccatgaatgtgcaccacatcctcagcaagaatttcagtaactatgggaaaggatctgacttccatgagattttcgaagttcttggtct |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| || ||||||| ||||||||| |||| ||| || || |||||||||||| | |
|
|
| T |
12962994 |
tcaccagtgatcccatgaatgtgcaccatatcactagcaagaatttcagcaattatgggagaggatctgatttccctgaaatctttgaagttcttggtat |
12963093 |
T |
|
| Q |
104 |
tggtattttcaatttggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaacaaaaacattgagatattctatcaacaaaac |
203 |
Q |
| |
|
| || || | ||||||||||||||||| ||||||||||| ||| || || |||||||||||||||||| |||| || ||| || | |||||||| | |
|
|
| T |
12963094 |
tagtcttataaatttggattccaatgattggaaacaagagaggacaatacttcattcattgctcaaaaggaaaagttttaagacatcccttcaacaaatc |
12963193 |
T |
|
| Q |
204 |
attcaaaagaagctagagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttgatttacaagatgttattgagaagtttacct |
303 |
Q |
| |
|
||||||||||||||||||| |||| | ||||||||||||||||||||| | |||| || ||| || |||||||||||| || |||||| ||| |||| |
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|
| T |
12963194 |
attcaaaagaagctagagagttgtctattaccatttcttgatcatgcaacaaaaggtttacaagtactcgatttacaagatattcttgagaggttcacct |
12963293 |
T |
|
| Q |
304 |
t |
304 |
Q |
| |
|
| |
|
|
| T |
12963294 |
t |
12963294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 13272698 - 13272402
Alignment:
| Q |
10 |
gtgatcccatgaatgtgcaccacatcctcagcaagaatttcagtaactatgggaaaggatctgacttccatgagattttcgaagttcttggtcttggtat |
109 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| |||||||| || ||||||||||||||||| |||| ||| |||| || ||||||||| || |||| |
|
|
| T |
13272698 |
gtgatcccatgaatgtgcatcacattaccagcaaaaatttcagcaattatgggaaaggatctgatttccctgaaatttgtgacgttcttggtgttagtat |
13272599 |
T |
|
| Q |
110 |
tttcaatttggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaacaaaaac-attgagatattctatcaacaaaacattca |
208 |
Q |
| |
|
| | ||| ||||||||||||||||||| ||||||||| | | ||||||||||||| ||| ||||||| |||||| || | || |||||||||||| |
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|
| T |
13272598 |
tgtaaatctggattccaatgaatggaagcaagaaaggactattcttcattcattgct-taaagcaaaaacttttgagacatcccttcgacaaaacattca |
13272500 |
T |
|
| Q |
209 |
aaagaagctagagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttgatttacaagatgttattgagaagtttacctttg |
306 |
Q |
| |
|
|||||| ||||| | |||| | ||||||||||||||||||||||| |||| ||| | | ||||||||||||||| ||||||||| ||| ||||||| |
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|
| T |
13272499 |
aaagaaactagaaagttgtctattaccatttcttgatcatgcatcaaaaggtgtacacgtacttgatttacaagatattattgagaggttcacctttg |
13272402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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