View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17992_low_18 (Length: 312)
Name: NF17992_low_18
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 4 - 282
Target Start/End: Original strand, 45178314 - 45178596
Alignment:
| Q |
4 |
taattgcctcctgctattacaagaagaatacagtcaacacaaactagatagaaatgtatttaattgagtaggaatttgaatgtacataggaaagatgatt |
103 |
Q |
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| T |
45178314 |
taattgcctcctgctattacaagaagaatacagtcaacacaaactagatagaaatgtatttaattgagtaggaatttgaatgtacataggaaagatgatt |
45178413 |
T |
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| Q |
104 |
ttaagaaaaatgtatattgtgttacac----aaataaataaaaacagacatatcaaaacaattgtaaaattcatctttcctattttaaatcaattcnnnn |
199 |
Q |
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| T |
45178414 |
ttaagaaaaatgtatattgtgttacacaaataaataaataaaaacagacatatcaaaacaattgtaaaattcatctttcctattttaaatcaattcaaaa |
45178513 |
T |
|
| Q |
200 |
nnntaggataagatataaagtgctaatttgtaggattccgccattgtgaataaatatcctcttcatttctcaaaataaataga |
282 |
Q |
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|| || ||||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||||||||||||||| |
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| T |
45178514 |
aaataagacaagatataaagtgctaatttgtagggttccgccattgcgaatgagtatcctcttcatttctcaaaataaataga |
45178596 |
T |
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