View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17992_low_2 (Length: 635)
Name: NF17992_low_2
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_low_2 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 20 - 621
Target Start/End: Complemental strand, 24494770 - 24494169
Alignment:
| Q |
20 |
aaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494770 |
aaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaag |
24494671 |
T |
|
| Q |
120 |
tgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttat |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494670 |
tgaagtccatgaaacatggtggctttgagatatcaaagaagtcttttcaaggctgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttat |
24494571 |
T |
|
| Q |
220 |
ttacagtgtaggctatgtcaggccttgtcatggataaatattgtagagcccctatgacgcttctgtattccgtactatctgctgcacttgcgccatcaga |
319 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24494570 |
ttacagtgtaggctatgtcaggccttgtcatggaaaaatattgtagagcccctatgacgcttctgtattccgtactatctgctacacttgcgccatcaga |
24494471 |
T |
|
| Q |
320 |
tttagtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtcaagtagatcatgaatatatttatgttgactc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494470 |
tttagtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtcaagtagatcatgaatatatttatgttgactc |
24494371 |
T |
|
| Q |
420 |
agaaataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttgatggaaaacatagtgcctagtgttgaaatgc |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494370 |
agaaataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttgatggaaaacatagtgcctagtgttgaaatgc |
24494271 |
T |
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| Q |
520 |
acttagcaattgcatggttgttgttgcctgtaattaaaatatcatcaacatataccaaagtgtagagtttgacatcacctttgagatagatgaatgatga |
619 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24494270 |
acttagcaattgcatggttgttgttgccagtaattaaaatatcatcaacatataccaaagtgtagagtttgacatcacctttgagatagatgaataatga |
24494171 |
T |
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| Q |
620 |
tg |
621 |
Q |
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|| |
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| T |
24494170 |
tg |
24494169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 20 - 621
Target Start/End: Complemental strand, 94120 - 93519
Alignment:
| Q |
20 |
aaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
94120 |
aaatgtaacatgtgcagaggtggatgtataatcatctcgatttccagcccaatcggcatcactgaatgcatatagattttgagaagaagtgcacttcaag |
94021 |
T |
|
| Q |
120 |
tgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||| |
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| T |
94020 |
tgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggttgtaaagtgtgtagatgatggatattgcatgaactgtgcaaacttat |
93921 |
T |
|
| Q |
220 |
ttacagtgtaggctatgtcaggccttgtcatggataaatattgtagagcccctatgacgcttctgtattccgtactatctgctgcacttgcgccatcaga |
319 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
93920 |
ttacagtgtaggctatgtcaggccttgtcatggacaaatattgtagagcccctatgacgcttctgtattccgtactatctgcttcacttgcgccatcaga |
93821 |
T |
|
| Q |
320 |
tttagtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtcaagtagatcatgaatatatttatgttgactc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93820 |
tttagtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtcaagtagatcatgaatatatttatgttgactc |
93721 |
T |
|
| Q |
420 |
agaaataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttgatggaaaacatagtgcctagtgttgaaatgc |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93720 |
agaaataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttgatggaaaacatagtgcctagtgttgaaatgc |
93621 |
T |
|
| Q |
520 |
acttagcaattgcatggttgttgttgcctgtaattaaaatatcatcaacatataccaaagtgtagagtttgacatcacctttgagatagatgaatgatga |
619 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
93620 |
acttagcaattgcatggttgttgttgcctgtaattaaaatatcatcaacatataccaaagtgtagagtttgacatcacctttgagatagatgaataatga |
93521 |
T |
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| Q |
620 |
tg |
621 |
Q |
| |
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|| |
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| T |
93520 |
tg |
93519 |
T |
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