View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17992_low_28 (Length: 276)
Name: NF17992_low_28
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 53996427 - 53996668
Alignment:
| Q |
13 |
gatgaagaagtgtaatacaaatgagattttccgtgtgaagtaaacgaatattatagttaccttagacatcatgagtgagtagcatttatcacgtatatat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53996427 |
gatgaagaagtgtaatacaaatgagattttccgtgtgaagtaaacgaatattatagttaccttagacatcatgagtgagtagcatttatcacgtatatat |
53996526 |
T |
|
| Q |
113 |
ggaaagtaaaacactattaatatcatgcatgcctaaatcttatactacccaagtcaaaacgggttgggatgttaagtttcaacaactaaagtgaaggggg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53996527 |
ggaaagtaaaacactattaatatcatgcatgcctaaatcttatactacccaagtcaaaacgggatgggatgttaagtttcaacaactaaagtgaaggggg |
53996626 |
T |
|
| Q |
213 |
attgatattaaacaccgaccattaagttgagtaggccaaaag |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53996627 |
attgatattaaacaccgaccattaagttgagtaggccaaaag |
53996668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University