View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17992_low_3 (Length: 588)
Name: NF17992_low_3
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 18 - 557
Target Start/End: Original strand, 33778280 - 33778822
Alignment:
| Q |
18 |
gataccccatccccacttggtttaacccagctgcaaccagaagcaaaacttgaccctagagaagagtttttgtatggagcacccaggaacactatgcagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33778280 |
gataccccatccccacttggtttaacccagctgcaaccagaagcaaaacttgaccctagagaagagtttttgtatggaacacccaggaacactatgcagg |
33778379 |
T |
|
| Q |
118 |
ggctcaaagatgctaccacagtgagtgttgtgcnnnnnnnnn---attgttaataggcacaattttaccattaaatcatgattacttactttgtgcttat |
214 |
Q |
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| T |
33778380 |
ggctcaaagatgctaccacagtgagtgttgtgcttttttttttttattgttaataggcacaattttaccattaaatcatgattacttactttgtgcttat |
33778479 |
T |
|
| Q |
215 |
ttatatgacagaatgaagtttatgttgtgcttggaaccattaagagaatagttaatagggaaaatttttggtatactgcatgtatatgctctaaggctgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33778480 |
ttatatgacagaatgaagtttatgttgtgcttggaaccattaagagaatagttaatagggaaaatttttggtatactgcatgtatatgctctaaggctgt |
33778579 |
T |
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| Q |
315 |
catccctgattctcaaatgttctattgtgagaagtgtgataggcatgtgaagaaagtattctctaggtgatctactttactctataattcttagttaatg |
414 |
Q |
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| T |
33778580 |
catccctgattctcaaatgttctattgtgagaagtgtgataggcatgtgaagaaagtattctctaggtgatctactttactctataactcttagttaaag |
33778679 |
T |
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| Q |
415 |
tttatgtgtttgacccaagaccttatacacactataaattaactgaatgttttataactgtactaggtactgtttgagggtgagagcaattgatcataca |
514 |
Q |
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| T |
33778680 |
tttatgtgtttgacccaagaccttatacacactataaattaactgaatgttttataactgtactaggtactgtttgagggtgagagcaattgatcataca |
33778779 |
T |
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| Q |
515 |
gattgtgctaccttagtaatttttgacaaagaagcaactgcac |
557 |
Q |
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| T |
33778780 |
gattgtgctaccttagtaatttttgacaaagaagcaactgcac |
33778822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 18 - 557
Target Start/End: Complemental strand, 1568077 - 1567535
Alignment:
| Q |
18 |
gataccccatccccacttggtttaacccagctgcaaccagaagcaaaacttgaccctagagaagagtttttgtatggagcacccaggaacactatgcagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1568077 |
gataccccatccccacttggtttaacccagctgcaaccagaagcaaaacttgaccctagagaagagtttttgtatggaacacccaggaacactatgcagg |
1567978 |
T |
|
| Q |
118 |
ggctcaaagatgctaccacagtgagtgttgtgcnnnnnnnnn---attgttaataggcacaattttaccattaaatcatgattacttactttgtgcttat |
214 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1567977 |
ggctcaaagatgctaccacagtgagtgttgtgcttttttttttttattgttaataggcacaattttaccattaaatcatgattacttactttgtgcttat |
1567878 |
T |
|
| Q |
215 |
ttatatgacagaatgaagtttatgttgtgcttggaaccattaagagaatagttaatagggaaaatttttggtatactgcatgtatatgctctaaggctgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1567877 |
ttatatgacagaatgaagtttatgttgtgcttggaaccattaagagaatagttaatagggaaaatttttggtatactgcatgtatatgctctaaggctgt |
1567778 |
T |
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| Q |
315 |
catccctgattctcaaatgttctattgtgagaagtgtgataggcatgtgaagaaagtattctctaggtgatctactttactctataattcttagttaatg |
414 |
Q |
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| T |
1567777 |
catccctgattctcaaatgttctattgtgagaagtgtgataggcatgtgaagaaagtattctctaggtgatctactttactctataactcttagttaaag |
1567678 |
T |
|
| Q |
415 |
tttatgtgtttgacccaagaccttatacacactataaattaactgaatgttttataactgtactaggtactgtttgagggtgagagcaattgatcataca |
514 |
Q |
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| T |
1567677 |
tttatgtgtttgacccaagaccttatacacactataaattaactgaatgttttataactgtactaggtactgtttgagggtgagagcaattgatcataca |
1567578 |
T |
|
| Q |
515 |
gattgtgctaccttagtaatttttgacaaagaagcaactgcac |
557 |
Q |
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| T |
1567577 |
gattgtgctaccttagtaatttttgacaaagaagcaactgcac |
1567535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 23364962 - 23365012
Alignment:
| Q |
18 |
gataccccatccccacttggtttaacccagctgcaaccagaagcaaaactt |
68 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23364962 |
gataccccatccccacttggtttaacccagctgcaactagaagcaaaactt |
23365012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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