View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17992_low_37 (Length: 220)
Name: NF17992_low_37
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_low_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 42287139 - 42286930
Alignment:
| Q |
1 |
ttcacatttccacttcttctcaccgtgcttacgagagaaatgctttttaattccagttagatctcctaaagctcttgaagggtcgtgatggacgcatgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42287139 |
ttcacatttccacttcttctcaccgtgcttacgagagaaatgctttttaattccagttagatctcctaaagctcttgaagggtcgtgatggacgcatgtg |
42287040 |
T |
|
| Q |
101 |
ggctcaggacacaaataaacctttctccttggctctttgttggacttttgctttaacttccaaggaagattgtgtcctcttctatgaagttgaagatttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42287039 |
ggctcaggacacaaataaacctttctccttggctctttgttggacttttgctttagcttccaaggaagattgtgtcctcttctatgaagttgaagatttt |
42286940 |
T |
|
| Q |
201 |
gctccctttg |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
42286939 |
gctccctttg |
42286930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 12804615 - 12804824
Alignment:
| Q |
1 |
ttcacatttccacttcttctcaccgtgcttacgagagaaatgctttttaattccagttagatctcctaaagctcttgaagggtcgtgatggacgcatgtg |
100 |
Q |
| |
|
||||||||||||||| |||||||| ||||| | ||| || ||||| ||||||||||| || || || | ||| ||||||||||| || || || ||||| |
|
|
| T |
12804615 |
ttcacatttccactttttctcaccatgctttctagaaaagtgcttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacacatgtt |
12804714 |
T |
|
| Q |
101 |
ggctcaggacacaaataaacctttctccttggctctttgttggacttttgctttaacttccaaggaagattgtgtcctcttctatgaagttgaagatttt |
200 |
Q |
| |
|
|| || ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| | |||||||||||||||||| ||||| | ||||| |
|
|
| T |
12804715 |
ggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaatttt |
12804814 |
T |
|
| Q |
201 |
gctccctttg |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
12804815 |
gctccctttg |
12804824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 12774913 - 12774750
Alignment:
| Q |
47 |
ttaattccagttagatctcctaaagctcttgaagggtcgtgatggacgcatgtgggctcaggacacaaataaacctttctccttggctctttgttggact |
146 |
Q |
| |
|
||||||||||| || || || | ||| ||||||||||| || || || ||||| || || ||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
12774913 |
ttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacacatgttggttctggacacaaataaacctttctctttggctctttgttactct |
12774814 |
T |
|
| Q |
147 |
tttgctttaacttccaaggaagattgtgtcctcttctatgaagttgaagattttgctccctttg |
210 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
12774813 |
tttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaattttgctccctttg |
12774750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 50788924 - 50789132
Alignment:
| Q |
2 |
tcacatttccacttcttctcaccgtgcttacgagagaaatgctttttaattccagttagatctcctaaagctcttgaagggtcgtgatggacgcatgtgg |
101 |
Q |
| |
|
||||| ||||| ||||||||||| || || |||||| | || || ||||| ||||| || || || | || ||||||||||| ||||| |||||||||| |
|
|
| T |
50788924 |
tcacacttccatttcttctcaccatgtttgcgagagtagtgtttcttaatcccagtgaggtcaccaagtgcccttgaagggtcatgatgaacgcatgtgg |
50789023 |
T |
|
| Q |
102 |
gctcaggacacaaataaacctttctccttggctctttgttggacttttgctttaacttccaaggaagattgtgtcctcttctatgaagttgaagattttg |
201 |
Q |
| |
|
|||||||||||| ||||||||||||| | || ||||| | | ||| ||||| | ||||||||| | |||||||||||||| ||||| || |||||||| |
|
|
| T |
50789024 |
gctcaggacacagataaacctttctcttaggttcttttgtagtcttctgcttaagcttccaaggcaagttgtgtcctcttctgtgaagctgtagattttg |
50789123 |
T |
|
| Q |
202 |
ctccctttg |
210 |
Q |
| |
|
||| ||||| |
|
|
| T |
50789124 |
ctctctttg |
50789132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 28496210 - 28496239
Alignment:
| Q |
1 |
ttcacatttccacttcttctcaccgtgctt |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28496210 |
ttcacatttccacttcttctcaccgtgctt |
28496239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 28496369 - 28496422
Alignment:
| Q |
157 |
cttccaaggaagattgtgtcctcttctatgaagttgaagattttgctccctttg |
210 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
28496369 |
cttccatggaaggttgtgtcctcttctatgtagttgaaggttttgatctctttg |
28496422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 36989361 - 36989300
Alignment:
| Q |
2 |
tcacatttccacttcttctcaccgtgcttacgagagaaatgctttttaattccagttagatc |
63 |
Q |
| |
|
|||||||||||||| |||||||| ||||| | | | || ||||||||||||||||| ||||| |
|
|
| T |
36989361 |
tcacatttccactttttctcaccatgctttctacaaaagtgctttttaattccagtaagatc |
36989300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 42898319 - 42898123
Alignment:
| Q |
2 |
tcacatttccacttcttctcaccgtgcttacgagagaaatgctttttaattccagttagatctcctaaagctcttgaagggtcgtgatggacgcatgtgg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||| ||||| || || |||||||| || || || |||||||| ||||| || || || || || | |
|
|
| T |
42898319 |
tcacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacacaagttg |
42898220 |
T |
|
| Q |
102 |
gctcaggacacaaataaacctttctccttggctctttgttggacttttgctttaacttccaaggaagattgtgtcctcttctatgaagttgaagatt |
198 |
Q |
| |
|
| || ||||||| |||||| || ||||| ||| ||| | | ||||||| |||||||| || | ||||||||||||| |||||||||||||||| |
|
|
| T |
42898219 |
gttctggacacacataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagatt |
42898123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 40749294 - 40749215
Alignment:
| Q |
119 |
acctttctccttggctctttgttggacttttgctttaacttccaaggaagattgtgtcctcttctatgaagttgaagatt |
198 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||||||||| |||||| || || ||||| |||||||||||||| |||||||| |
|
|
| T |
40749294 |
acctttttccttggttctttgttggatctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagatt |
40749215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 33186756 - 33186637
Alignment:
| Q |
2 |
tcacatttccacttcttctcaccgtgcttacgagagaaatgctttttaattccagttagatctcctaaagctcttgaagggtcgtgatggacgcatgtgg |
101 |
Q |
| |
|
|||||||||||||| |||||||| || || | | | || |||||||| || ||||||| ||| ||||||||||| ||||| || ||||| || || || | |
|
|
| T |
33186756 |
tcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatgatgaacacaagtag |
33186657 |
T |
|
| Q |
102 |
gctcaggacacaaataaacc |
121 |
Q |
| |
|
| |||||||| | ||||||| |
|
|
| T |
33186656 |
gttcaggacaaacataaacc |
33186637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University