View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17992_low_4 (Length: 527)
Name: NF17992_low_4
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Original strand, 4775713 - 4776203
Alignment:
| Q |
19 |
atgataatctatggcaatatgcttcatcctagagtactgaaagacagggtttgcacatagagatgtagctccaatgttttctaagaatattgttggtgcc |
118 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |
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| T |
4775713 |
atgataatctatggcaatatgcttcatcctagagt---gaaagacagggtttgcacatagatatgtagctccaatgttgtcttagaatattgttggtgca |
4775809 |
T |
|
| Q |
119 |
gttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775810 |
gttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttg |
4775909 |
T |
|
| Q |
219 |
caattgttggttgcttcttgcatgaccaagagataatattagggccaatataaattaaataagcacctg----tttcctgtcaattgtgtctcctgccca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
4775910 |
caattgttggttgcttcttgcatgaccaagagataatattagggccaaaataaattaaataagcacctgttgatttcctgtcaattgtgtctcctgccta |
4776009 |
T |
|
| Q |
315 |
atctgcatcacaaaagcttgtgaggcttgtatttgaagatcttgtgagatggagtccattggagatggtggatttgagatagcgcaatactctcttcaag |
414 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4776010 |
atctgcatcacaaaagcttgtgaggtttgtatttgaagatcttgtgagatggagtccattggagatggtggatttgagatagcgcaatactctcttcaag |
4776109 |
T |
|
| Q |
415 |
gcttgcatatctgtcacagtaggagcttgcatttgttatgctagtttattcactggaaatgctatgtctgggcgagtgattgaaaggtagtgta |
508 |
Q |
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| T |
4776110 |
gcttgcatatctgtcacagtaggagcttgcatttgttatgctagtttattcactggaaatgcaatgtctgggcgagtgattgaaaggtagtgta |
4776203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 43061074 - 43061400
Alignment:
| Q |
19 |
atgataatctatggcaatatgcttcatcctagagtactgaaagacagggtttgcacatagagatgtagctccaatgttttctaagaatattgttggtgcc |
118 |
Q |
| |
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|||||||||||||||||| || ||||||||| ||| |||| |||||||||||||||||| ||||||||| |||||| ||| ||||||| |||||||| |
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| T |
43061074 |
atgataatctatggcaatgtgtttcatcctatagt---gaaaaacagggtttgcacatagatatgtagctctaatgttgtctgagaatatcgttggtgca |
43061170 |
T |
|
| Q |
119 |
gttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttg |
218 |
Q |
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| T |
43061171 |
gttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcctgagtagtggctgctatagtccgatattcagcttcagttgatgattttg |
43061270 |
T |
|
| Q |
219 |
caattgttggttgcttcttgcatgaccaagagataatattagggccaatataaattaaataagcacctgtt----tcctgtcaattgtgtctcctgccca |
314 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43061271 |
caactgttggctgcttcttgcatgaccaagagataatattagggccaaaataaatgaaataagcacctgttcatatcctgtcaattgtgtctcctgccca |
43061370 |
T |
|
| Q |
315 |
atctgcatcacaaaagcttgtgaggcttgt |
344 |
Q |
| |
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|||||||||||||||| ||||||||||||| |
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|
| T |
43061371 |
atctgcatcacaaaagtttgtgaggcttgt |
43061400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 45192914 - 45192874
Alignment:
| Q |
56 |
tgaaagacagggtttgcacatagagatgtagctccaatgtt |
96 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||| |
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| T |
45192914 |
tgaaggacagggtttgcacatagatatgtagctccaatgtt |
45192874 |
T |
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