View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17992_low_6 (Length: 486)
Name: NF17992_low_6
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 140 - 418
Target Start/End: Original strand, 630276 - 630553
Alignment:
| Q |
140 |
acgatgaaatgggagctggtggatatgggtagcctgaacgggacactgttgaattctaagtcaatcaatcatctggacactgaacgtaggcattggggag |
239 |
Q |
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| T |
630276 |
acgatgaaatgggagctggtggatatgggtagcctgaacggaacactgttgaattctaagtcaatcaatcgtctggacactgaacgtaggcattggggag |
630375 |
T |
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| Q |
240 |
atccgatgaatcttgctaatgaagatgttataacacttggaacaacatcgaaaataattgtaagtgtgtgagtgtgtgaatgaaccaccttatttgaagg |
339 |
Q |
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| T |
630376 |
atccgatgaatcttgctaatggagatgttataacacttggaacaacatcgaaaataattgtaagtttgtgagt-tgtgaatgaaccaccttatttgaagg |
630474 |
T |
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| Q |
340 |
tgctgccttttgcttatgtttagattctttttattgccatagatgatagatacaaagcttgcttaaactcgtatgcatg |
418 |
Q |
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| T |
630475 |
tgctgccttttgcttatgtttagattctttttattgccatagatgatagatgcaaagcttgcttaaactcgtatgcatg |
630553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 630041 - 630165
Alignment:
| Q |
15 |
ggtctgttcagtcgacggagtcttctcgtttactgttgacgttgggagggattttccctagtgattttttgataaaggataatgaagtgtcggggaagca |
114 |
Q |
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| T |
630041 |
ggtctgttcagtcgacggagtcttctcgtttaccgttgacgttgggacggattttccctagtgattttttgataaaggataatgaagtgtcggggaagca |
630140 |
T |
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| Q |
115 |
tgctttgatcaagtggaatttggat |
139 |
Q |
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| T |
630141 |
tgctttgatcaagtggaatttggat |
630165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 470
Target Start/End: Complemental strand, 24279726 - 24279684
Alignment:
| Q |
428 |
aataaactatatttgtgatattatgagtttcgacagttgattt |
470 |
Q |
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| T |
24279726 |
aataaactgtatttatgatattatgagtttcgacagttgattt |
24279684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 470
Target Start/End: Original strand, 18558330 - 18558372
Alignment:
| Q |
428 |
aataaactatatttgtgatattatgagtttcgacagttgattt |
470 |
Q |
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| T |
18558330 |
aataaactgtatttatgatattatgagtttcgacaattgattt |
18558372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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