View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17992_low_8 (Length: 472)
Name: NF17992_low_8
Description: NF17992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17992_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 47862173 - 47861919
Alignment:
| Q |
1 |
tatagaagtagtgagcgagcactcactgaacagtcagtaaaacccctcagccagagagagag--------gggcacactgaactcaactgaactcaacaa |
92 |
Q |
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| T |
47862173 |
tatagaagtagtgagcgagcact----gaacagtcagtaaaacccctcagccagagagagagagagagaggggcacactgaactcaactgaactcaacaa |
47862078 |
T |
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| Q |
93 |
ccaaaacgacgaacgacgacgttttcactctcctctctgattctacaaatcaaacaaacgacgttcgttcgcgatttgatttgatttgattccgaatttc |
192 |
Q |
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| T |
47862077 |
tcaaaacgacgaacgacgacgttttcactctcctctctgattctacaaatcaaacaaacgacgttcgttcgcgatttgatttgatttgattccgaatttc |
47861978 |
T |
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| Q |
193 |
tgcatcatcacatcattccaagttgaatctcgattaattaattaggttttagcattcac |
251 |
Q |
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| T |
47861977 |
tgcatcatcacatcattccaagttgaatctcgattaattaattaggttttagcattcac |
47861919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 275 - 453
Target Start/End: Complemental strand, 47861901 - 47861723
Alignment:
| Q |
275 |
tgcaaggttttactccaaataccgatttctccgaacttcactctaccatgcgagccatcgagttagctagcaactccattcaggtttcttcgtattcctc |
374 |
Q |
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| T |
47861901 |
tgcaaggttttactccaaataccgatttctccgaacttcactctaccatgcgagccatcgagttagctagcaactccattcaggtttcttcgtattcctc |
47861802 |
T |
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| Q |
375 |
tccgttcttaataatactatactgtaatcgcaataattgcaatgctcaatataatcatgttattttcagatgcaaatca |
453 |
Q |
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| T |
47861801 |
tccgttcttaataatactatactgtaatcgcaataatcgcaatgctcaatataatcatgttattttcagatgcaaatca |
47861723 |
T |
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