View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17993_high_11 (Length: 270)

Name: NF17993_high_11
Description: NF17993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17993_high_11
NF17993_high_11
[»] chr3 (20 HSPs)
chr3 (14-161)||(36383078-36383225)
chr3 (39-150)||(15005049-15005160)
chr3 (34-150)||(14434712-14434828)
chr3 (53-149)||(15031312-15031408)
chr3 (38-150)||(48755418-48755531)
chr3 (34-150)||(11989117-11989233)
chr3 (58-150)||(43562696-43562788)
chr3 (34-113)||(44967983-44968062)
chr3 (76-150)||(1426575-1426649)
chr3 (34-131)||(26498620-26498717)
chr3 (34-131)||(33343115-33343211)
chr3 (33-122)||(38498222-38498311)
chr3 (34-150)||(21514835-21514951)
chr3 (49-156)||(18445492-18445599)
chr3 (64-150)||(15031279-15031365)
chr3 (59-148)||(26920248-26920337)
chr3 (33-85)||(20759083-20759135)
chr3 (31-65)||(15031289-15031323)
chr3 (32-65)||(33343107-33343140)
chr3 (49-106)||(41984992-41985049)
[»] chr7 (14 HSPs)
chr7 (34-150)||(27508667-27508783)
chr7 (51-150)||(14197548-14197647)
chr7 (34-154)||(6441417-6441536)
chr7 (49-152)||(45012935-45013038)
chr7 (53-138)||(43257355-43257440)
chr7 (49-154)||(38761079-38761184)
chr7 (40-148)||(5080187-5080295)
chr7 (38-124)||(36150933-36151019)
chr7 (53-154)||(37787778-37787879)
chr7 (58-150)||(15000737-15000829)
chr7 (64-131)||(45012982-45013049)
chr7 (31-65)||(6441488-6441522)
chr7 (31-65)||(27508677-27508711)
chr7 (31-65)||(37787831-37787865)
[»] chr5 (16 HSPs)
chr5 (34-150)||(2555530-2555646)
chr5 (33-150)||(17497086-17497203)
chr5 (34-150)||(30852670-30852786)
chr5 (34-146)||(10760080-10760191)
chr5 (49-156)||(19491757-19491864)
chr5 (40-150)||(21943821-21943931)
chr5 (28-126)||(34419595-34419693)
chr5 (73-154)||(12895615-12895695)
chr5 (40-149)||(20429955-20430064)
chr5 (59-154)||(19564752-19564847)
chr5 (49-146)||(13753316-13753413)
chr5 (34-110)||(21211489-21211565)
chr5 (35-150)||(11298050-11298165)
chr5 (54-133)||(31912288-31912367)
chr5 (102-156)||(32539375-32539429)
chr5 (59-131)||(30100708-30100780)
[»] chr4 (27 HSPs)
chr4 (34-150)||(5448287-5448403)
chr4 (47-150)||(10380680-10380783)
chr4 (34-150)||(18830646-18830762)
chr4 (34-150)||(2634096-2634212)
chr4 (40-150)||(5324761-5324871)
chr4 (53-150)||(11821814-11821911)
chr4 (53-154)||(1387369-1387470)
chr4 (34-131)||(22017954-22018051)
chr4 (34-150)||(2063237-2063353)
chr4 (74-150)||(3370056-3370132)
chr4 (64-131)||(1387444-1387511)
chr4 (49-156)||(9826717-9826824)
chr4 (64-150)||(37695034-37695120)
chr4 (53-150)||(30470909-30471006)
chr4 (52-148)||(18500691-18500787)
chr4 (53-131)||(10757661-10757739)
chr4 (53-131)||(10970832-10970910)
chr4 (47-149)||(47144781-47144883)
chr4 (34-150)||(18836351-18836466)
chr4 (34-150)||(37694972-37695088)
chr4 (51-150)||(2232461-2232558)
chr4 (40-131)||(8951098-8951189)
chr4 (64-133)||(18830708-18830777)
chr4 (58-131)||(30378852-30378924)
chr4 (53-154)||(47943539-47943640)
chr4 (73-154)||(55382667-55382748)
chr4 (73-129)||(3370045-3370101)
[»] scaffold0407 (6 HSPs)
scaffold0407 (38-149)||(911-1022)
scaffold0407 (38-149)||(7375-7486)
scaffold0407 (64-154)||(969-1059)
scaffold0407 (64-154)||(7433-7523)
scaffold0407 (102-154)||(943-995)
scaffold0407 (102-154)||(7407-7459)
[»] scaffold0011 (1 HSPs)
scaffold0011 (34-154)||(190250-190370)
[»] chr8 (17 HSPs)
chr8 (34-150)||(31253995-31254111)
chr8 (34-150)||(35202689-35202806)
chr8 (34-150)||(23976163-23976279)
chr8 (34-150)||(22469505-22469620)
chr8 (34-154)||(25149310-25149430)
chr8 (55-150)||(4289018-4289113)
chr8 (55-150)||(41358775-41358870)
chr8 (40-154)||(37543870-37543984)
chr8 (49-154)||(18324084-18324189)
chr8 (86-154)||(29585574-29585642)
chr8 (34-107)||(12106939-12107012)
chr8 (70-150)||(24609134-24609214)
chr8 (68-148)||(21124420-21124500)
chr8 (64-131)||(25149372-25149439)
chr8 (64-131)||(29585584-29585651)
chr8 (31-65)||(31254005-31254039)
chr8 (49-118)||(37494396-37494465)
[»] chr1 (7 HSPs)
chr1 (34-150)||(37608063-37608178)
chr1 (34-154)||(50335528-50335648)
chr1 (34-150)||(13735536-13735653)
chr1 (31-65)||(32374110-32374144)
chr1 (64-131)||(50335519-50335586)
chr1 (73-129)||(13735525-13735581)
chr1 (88-148)||(32374092-32374152)
[»] chr2 (10 HSPs)
chr2 (51-150)||(31820005-31820104)
chr2 (34-131)||(32092831-32092928)
chr2 (40-138)||(17914076-17914174)
chr2 (40-154)||(39598585-39598699)
chr2 (34-150)||(22092951-22093067)
chr2 (64-131)||(39598641-39598708)
chr2 (64-134)||(8219214-8219284)
chr2 (34-150)||(24006952-24007068)
chr2 (53-150)||(31499441-31499538)
chr2 (76-150)||(8219230-8219304)
[»] chr6 (12 HSPs)
chr6 (53-150)||(19295372-19295469)
chr6 (49-156)||(21222552-21222659)
chr6 (53-150)||(25089243-25089340)
chr6 (34-152)||(10672690-10672808)
chr6 (34-150)||(13536651-13536768)
chr6 (58-150)||(10862104-10862196)
chr6 (64-131)||(19295415-19295482)
chr6 (34-113)||(26705156-26705235)
chr6 (73-149)||(12651194-12651269)
chr6 (64-131)||(21222599-21222666)
chr6 (33-65)||(19295457-19295489)
chr6 (64-148)||(26705089-26705173)
[»] scaffold0102 (1 HSPs)
scaffold0102 (36-149)||(23984-24097)
[»] scaffold0003 (2 HSPs)
scaffold0003 (49-150)||(314169-314270)
scaffold0003 (64-129)||(314158-314223)
[»] scaffold0049 (1 HSPs)
scaffold0049 (37-112)||(59780-59855)
[»] scaffold0026 (1 HSPs)
scaffold0026 (49-156)||(57534-57641)
[»] scaffold1300 (1 HSPs)
scaffold1300 (49-131)||(1460-1542)
[»] scaffold0024 (1 HSPs)
scaffold0024 (49-156)||(127889-127996)
[»] scaffold0039 (1 HSPs)
scaffold0039 (49-97)||(27576-27624)
[»] scaffold0047 (1 HSPs)
scaffold0047 (49-131)||(11683-11765)
[»] scaffold0018 (1 HSPs)
scaffold0018 (31-65)||(72015-72049)
[»] scaffold0066 (1 HSPs)
scaffold0066 (53-150)||(15456-15553)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 36383225 - 36383078
Alignment:
Q  14 aggtaaaaatggggcactttagtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgac 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  36383225 aggtaaaaatggggcactttagtccctgaatgcaaactctgttagtcaattttagggactaaagtgactaacgaagtctatattcagagactaaattgac 36383126  T
Q  114 caacaaagtctgcattcaagaattaaattgactaacaaagtattcaaa 161  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  36383125 caacaaagtctgcattcaaggattaaattgactaacaaagtattcaaa 36383078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 15005160 - 15005049
Alignment:
Q  39 ctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaatta 138  Q
    ||||||| | |||||||  |||||||||||||||| ||||||||||| |||| |||||| |  ||||||||| || |||  |||||||||||| | ||||    
T  15005160 ctgaatgtagactctgtcggtcaatttcagggatttaagtgactaacaaagtatacattcaaggactaaattaactaactgagtctgcattcagggatta 15005061  T
Q  139 aattgactaaca 150  Q
    ||||||||||||    
T  15005060 aattgactaaca 15005049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 14434712 - 14434828
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    ||||| |||||| | ||| ||||||| ||||||||||| ||||||||||| || |||||||||| |||||||||||| || | |  ||| |||||||| |    
T  14434712 agtccttgaatgtagactttgttagttaatttcagggactaaagtgactagcggagtctacattcagagactaaattaactatctgagtttgcattcagg 14434811  T
Q  134 aattaaattgactaaca 150  Q
     | ||||||||||||||    
T  14434812 gactaaattgactaaca 14434828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 15031408 - 15031312
Alignment:
Q  53 tgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaac 149  Q
    |||| |||||||||||||| |||||||||||||| |||||||||| || |||||||||||| |||  ||||| ||||||   | |||||||||||||    
T  15031408 tgttggtcaatttcagggactaaagtgactaacggagtctacattcagtgactaaattgactaacggagtctacattcagtgactaaattgactaac 15031312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 48755531 - 48755418
Alignment:
Q  38 cctgaatgcaaactctgttagtcaatttcagggattaaagtgactaac-gaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaat 136  Q
    |||||||| | |||||||| ||||||||||||| | ||||||||||||   |||||||||| |  |||||||||||| |||  |||||||||||| | |     
T  48755531 cctgaatgtagactctgttggtcaatttcaggggtcaaagtgactaacacgagtctacattcatggactaaattgactaacggagtctgcattcagggac 48755432  T
Q  137 taaattgactaaca 150  Q
    ||||||||||||||    
T  48755431 taaattgactaaca 48755418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 11989117 - 11989233
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||  | |||||||| ||||||||||| || ||||||| |||||| |||||||||| |  |||||||||||  |||  |||||||||||| |    
T  11989117 agtccctgaatatagactctgttggtcaatttcagagactaaagtggctaacggagtctacatttaaggactaaattgattaacggagtctgcattcagg 11989216  T
Q  134 aattaaattgactaaca 150  Q
     | || |||||||||||    
T  11989217 gactagattgactaaca 11989233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 43562696 - 43562788
Alignment:
Q  58 gtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    |||||||| || || ||||||||||||||| ||||||||| || || ||||||||| ||  ||||||||||||||  ||||||||||| ||||    
T  43562696 gtcaattttagagactaaagtgactaacgatgtctacattcagggattaaattgactaatgaagtctgcattcaacgattaaattgacaaaca 43562788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 44968062 - 44967983
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgac 113  Q
    ||||||| |||| | ||| |||| |||||||||||||||||||||||||||   |||||||||| | |||||||||||||    
T  44968062 agtccctaaatgtagactttgttggtcaatttcagggattaaagtgactaagagagtctacattcaaagactaaattgac 44967983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 1426649 - 1426575
Alignment:
Q  76 agtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    ||||||||||| |||||||||| || |||||||||||| |||  |||||||||||| | | ||||||||||||||    
T  1426649 agtgactaacggagtctacatttagggactaaattgactaacggagtctgcattcagggactaaattgactaaca 1426575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 26498620 - 26498717
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    |||||||||||| | ||  |||| |||||||||||||| |||||||||||||| ||| | |||| || |||||||||||| |||  ||||| ||||||    
T  26498620 agtccctgaatgtagaccatgttggtcaatttcagggactaaagtgactaacggagtatgcattcagtgactaaattgactaaccgagtctacattca 26498717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 33343211 - 33343115
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    ||||| |||||  |||||||||| |||||||||||| | |||| ||| |||| ||||||||||| || |||||||||||| |||| ||| ||||||||    
T  33343211 agtccttgaatataaactctgttggtcaatttcaggaactaaa-tgattaacaaagtctacattcagggactaaattgactaacatagtttgcattca 33343115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 38498311 - 38498222
Alignment:
Q  33 tagtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagt 122  Q
    ||||| ||||||| | ||| ||||||| ||||| ||||| ||||||||||||   |||||||||| || |||||||||||| ||||||||    
T  38498311 tagtctctgaatgtagactttgttagttaattttagggactaaagtgactaatagagtctacattcagggactaaattgactaacaaagt 38498222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 21514951 - 21514835
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| | ||| | || |||||||||| |||||||||| ||||||  |||| ||||| |  |||||||||||| ||| ||||| ||||||| |    
T  21514951 agtccctgaatgtagactatattggtcaatttcatggattaaagtaactaacagagtccacattcaaggactaaattgactaacgaagtccgcattcagg 21514852  T
Q  134 aattaaattgactaaca 150  Q
     | |||||| |||||||    
T  21514851 gactaaattaactaaca 21514835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 18445492 - 18445599
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaa 148  Q
    ||||||||||||||||||| ||||||| |||||||||  |||||| |||  | || ||||||||  ||| |||||||||||||   | ||| ||||||||    
T  18445492 actctgttagtcaatttcaaggattaatgtgactaactgagtctaaattctgggattaaattgattaacgaagtctgcattcagatactaagttgactaa 18445591  T
Q  149 caaagtat 156  Q
    || |||||    
T  18445592 catagtat 18445599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 15031365 - 15031279
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    ||||| || |||| ||||||||| |||||||||| || |||||||||||| |||  ||| |||||||| | | ||||||||||||||    
T  15031365 ttcagtgactaaattgactaacggagtctacattcagtgactaaattgactaacggagtttgcattcagggactaaattgactaaca 15031279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 26920337 - 26920248
Alignment:
Q  59 tcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaa 148  Q
    |||||||||||||||||||||||||| | || ||||||| |  |||||||||||| ||| |||| | |||| | ||| |||||| |||||    
T  26920337 tcaatttcagggattaaagtgactaatggagcctacatttaaggactaaattgactaacgaagtatacattgaggaactaaattaactaa 26920248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 20759135 - 20759083
Alignment:
Q  33 tagtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaac 85  Q
    |||||| |||||| | ||| ||||||||||||||||||| |||||||||||||    
T  20759135 tagtccttgaatgtagactttgttagtcaatttcagggactaaagtgactaac 20759083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 15031289 - 15031323
Alignment:
Q  31 tttagtccctgaatgcaaactctgttagtcaattt 65  Q
    |||||||||||||||||||||| ||||||||||||    
T  15031289 tttagtccctgaatgcaaactccgttagtcaattt 15031323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 33343107 - 33343140
Alignment:
Q  32 ttagtccctgaatgcaaactctgttagtcaattt 65  Q
    |||||||||||||||||||| |||||||||||||    
T  33343107 ttagtccctgaatgcaaactatgttagtcaattt 33343140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 41984992 - 41985049
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagacta 106  Q
    ||||||||||||||||||| ||||||| |||||||||  |||||| ||| || |||||    
T  41984992 actctgttagtcaatttcaaggattaatgtgactaactgagtctaaattcagggacta 41985049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 27508783 - 27508667
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| | ||||||||||||||||||| ||| |||||||||||||| |||||||||| || |||||||||||| |||| |||||||||||| |    
T  27508783 agtccctgaatgtagactctgttagtcaatttcatggactaaagtgactaacggagtctacattcagggactaaattgactaacagagtctgcattcagg 27508684  T
Q  134 aattaaattgactaaca 150  Q
     | ||||||||||||||    
T  27508683 gactaaattgactaaca 27508667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 14197548 - 14197647
Alignment:
Q  51 tctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    |||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||  |||||||||||| | ||||||||||||||||    
T  14197548 tctgttggtcaatttcagggactaaagtgactaacggagtctacattgagagactaaattgactaacggagtctgcattcagggattaaattgactaaca 14197647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 6441417 - 6441536
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| | ||||| ||||||||||||| |||  ||||||||||||| |||||||||| ||||||||||||||| |||| |||||||||||| |    
T  6441417 agtccctgaatgtagactct-ttagtcaatttcaaggacaaaagtgactaacggagtctacatttagagactaaattgactaacagagtctgcattcagg 6441515  T
Q  134 aattaaattgactaacaaagt 154  Q
     | ||||||||||||||||||    
T  6441516 gactaaattgactaacaaagt 6441536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 45012935 - 45013038
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaa 148  Q
    ||||| || |||||||||||||| |||||||| || || |||||||||| ||||| ||||||||| |||  |||||||||||| | | ||||||||||||    
T  45012935 actctattggtcaatttcagggactaaagtgattagcggagtctacattcagagattaaattgactaacggagtctgcattcagggactaaattgactaa 45013034  T
Q  149 caaa 152  Q
    ||||    
T  45013035 caaa 45013038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 43257355 - 43257440
Alignment:
Q  53 tgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaatta 138  Q
    |||| |||||||||||||| |||| |||||||||||||||||||| || |||||||||||| |||| |||||  ||||||| ||||    
T  43257355 tgttggtcaatttcagggagtaaattgactaacgaagtctacatttagggactaaattgactaacagagtctatattcaaggatta 43257440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 38761079 - 38761184
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaa 148  Q
    ||||||||  |||||||  |||| |||||||||||||  ||||| |||| || |||||||||||| |||| ||||||||||| || | |||||||| |||    
T  38761079 actctgttgatcaatttttgggactaaagtgactaacagagtctgcattcagggactaaattgactaacagagtctgcattcgaggactaaattgattaa 38761178  T
Q  149 caaagt 154  Q
    ||||||    
T  38761179 caaagt 38761184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 5080187 - 5080295
Alignment:
Q  40 tgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaa 139  Q
    |||||| | ||||||||||||||||||| ||| |||| ||| ||||| |||||||||| ||  ||||||||||  |||  |||||||||||| | | |||    
T  5080187 tgaatgtagactctgttagtcaatttcaaggactaaaatgattaacggagtctacattcaggtactaaattgattaacggagtctgcattcagggactaa 5080286  T
Q  140 attgactaa 148  Q
    |||||||||    
T  5080287 attgactaa 5080295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 36151019 - 36150933
Alignment:
Q  38 cctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtct 124  Q
    |||||||| | ||| |||| |||||||||| ||| |||| ||||||||| ||| |||||| ||||||||||||||| |||| |||||    
T  36151019 cctgaatgtagactttgttggtcaatttcaaggactaaaatgactaacggagtttacattcagagactaaattgactaacagagtct 36150933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 37787778 - 37787879
Alignment:
Q  53 tgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaacaaa 152  Q
    |||| |||||||| |  ||||||| |||||| || |||||||||| |  |||||||||||| |||| ||| |||||||| | | ||||||||||||||||    
T  37787778 tgtttgtcaattttaaagattaaaatgactagcggagtctacattcaacgactaaattgactaacagagtatgcattcagggactaaattgactaacaaa 37787877  T
Q  153 gt 154  Q
    ||    
T  37787878 gt 37787879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 15000829 - 15000737
Alignment:
Q  58 gtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    |||||||||||||| ||||||| | |||| |||||||||| || |||||||||||| | |  ||||| |||||||| | |||| |||||||||    
T  15000829 gtcaatttcagggactaaagtgtccaacggagtctacattaagggactaaattgactatcggagtcttcattcaaggactaaactgactaaca 15000737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 45012982 - 45013049
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    ||||| ||||||| ||||||||| ||||| |||| || |||||||||||| |||||| ||| ||||||    
T  45012982 ttcagagattaaattgactaacggagtctgcattcagggactaaattgactaacaaactctacattca 45013049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 6441522 - 6441488
Alignment:
Q  31 tttagtccctgaatgcaaactctgttagtcaattt 65  Q
    ||||||||||||||||| |||||||||||||||||    
T  6441522 tttagtccctgaatgcagactctgttagtcaattt 6441488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 27508677 - 27508711
Alignment:
Q  31 tttagtccctgaatgcaaactctgttagtcaattt 65  Q
    ||||||||||||||||| |||||||||||||||||    
T  27508677 tttagtccctgaatgcagactctgttagtcaattt 27508711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 37787865 - 37787831
Alignment:
Q  31 tttagtccctgaatgcaaactctgttagtcaattt 65  Q
    ||||||||||||||||| |||||||||||||||||    
T  37787865 tttagtccctgaatgcatactctgttagtcaattt 37787831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 2555646 - 2555530
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| | |||  ||| ||||||||||||||||||||||||||||||||||||| || || |||||| ||||| ||| ||||||||||||||     
T  2555646 agtccctgaatgtagactgcgttggtcaatttcagggattaaagtgactaacgaagtctacgttcagggactaatttgactaacgaagtctgcattcaac 2555547  T
Q  134 aattaaattgactaaca 150  Q
     | ||||||||||||||    
T  2555546 gactaaattgactaaca 2555530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 150
Target Start/End: Complemental strand, 17497203 - 17497086
Alignment:
Q  33 tagtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaa 132  Q
    ||||||||||||| | ||| |||| |||||||||||||| |||||||||  ||| |||||||||| || ||||||||| || |||| | |||||||||||    
T  17497203 tagtccctgaatgtagactttgttggtcaatttcagggactaaagtgaccgacggagtctacattcagggactaaattaactaacagaatctgcattcaa 17497104  T
Q  133 gaattaaattgactaaca 150  Q
    | | ||||||||||||||    
T  17497103 ggactaaattgactaaca 17497086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 30852786 - 30852670
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    ||||||||| || | |||||||| |||||||||| | | |||||||||||||| | |||||||| |||||||||||||||  || ||||||||||||| |    
T  30852786 agtccctgattgtagactctgttggtcaatttcatgaactaaagtgactaacggaatctacattcagagactaaattgacttacgaagtctgcattcagg 30852687  T
Q  134 aattaaattgactaaca 150  Q
     | ||||||||||||||    
T  30852686 gactaaattgactaaca 30852670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 10760080 - 10760191
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| ||||| |||| |||||||||| ||| |||| ||| ||||| |||||||||| || |||||||||||| |||  |||||||||||| |    
T  10760080 agtccctgaatgtaaactttgttggtcaatttcaaggactaaa-tgattaacggagtctacattcagggactaaattgactaacggagtctgcattcagg 10760178  T
Q  134 aattaaattgact 146  Q
     | ||||||||||    
T  10760179 gactaaattgact 10760191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 19491864 - 19491757
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaa 148  Q
    ||||||||||||||||||| ||||||| |||||||||  |||||| ||| || |||||||||||  ||| |||||||||||||   | ||| ||||||||    
T  19491864 actctgttagtcaatttcaaggattaatgtgactaactgagtctaaattcagggactaaattgattaacgaagtctgcattcagatactaagttgactaa 19491765  T
Q  149 caaagtat 156  Q
    || |||||    
T  19491764 catagtat 19491757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 21943821 - 21943931
Alignment:
Q  40 tgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaa 139  Q
    |||||| | ||| ||||||||||||| ||||| |||||||| ||||  | |||||||| | ||||||||||||| |||||||| |||||||| | | |||    
T  21943821 tgaatgtagactttgttagtcaattttagggactaaagtgattaacataatctacattcaaagactaaattgactaacaaagtatgcattcagggactaa 21943920  T
Q  140 attgactaaca 150  Q
    ||||| |||||    
T  21943921 attgattaaca 21943931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 34419693 - 34419595
Alignment:
Q  28 cactttagtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgc 126  Q
    |||||||||||||||||| | ||| |||| |||||||||||||| |||| |||| |||  |||||||||| |  |||||||||||| ||| ||||||||    
T  34419693 cactttagtccctgaatgtagactttgttggtcaatttcagggactaaaatgaccaacagagtctacatttaaggactaaattgactaacgaagtctgc 34419595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 12895695 - 12895615
Alignment:
Q  73 taaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaacaaagt 154  Q
    |||||| | |||||||||||||||| | | ||||||||||| |||| |||||||||| ||| ||||||||||||||||||||    
T  12895695 taaagtaattaacgaagtctacatttata-actaaattgactaacagagtctgcatttaaggattaaattgactaacaaagt 12895615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 149
Target Start/End: Original strand, 20429955 - 20430064
Alignment:
Q  40 tgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaa 139  Q
    |||||| | |||||||| |||||||||| ||| ||||||||| |||  ||| |||||| | | |||||||| || |||| |||||||||||| ||| |||    
T  20429955 tgaatgtagactctgttggtcaatttcaaggactaaagtgacgaacagagtttacattcaaaaactaaattaactaacagagtctgcattcatgaactaa 20430054  T
Q  140 attgactaac 149  Q
    ||||||||||    
T  20430055 attgactaac 20430064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 19564752 - 19564847
Alignment:
Q  59 tcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaacaaagt 154  Q
    ||||||||||||| |||||||| ||| | |||||||||| ||||||||||||||| |||  ||| || | ||||| | ||||||||||||| ||||    
T  19564752 tcaatttcagggactaaagtgattaatggagtctacattcagagactaaattgactaacggagtatggaatcaaggaataaattgactaacgaagt 19564847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 13753316 - 13753413
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgact 146  Q
    |||||||| |||||||||||||| |||||||||| | | ||||||| || || | |||||||||| |||  |||||||||| ||| | ||||||||||    
T  13753316 actctgttggtcaatttcagggactaaagtgactgatggagtctactttcaggggctaaattgactaacggagtctgcatttaaggactaaattgact 13753413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 21211489 - 21211565
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaatt 110  Q
    |||| ||||||| | ||| |||| |||||||||||| | |||||||||||||| | |||||||| ||||||||||||    
T  21211489 agtctctgaatgtagactttgttggtcaatttcaggaactaaagtgactaacgcaatctacattcagagactaaatt 21211565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 11298165 - 11298050
Alignment:
Q  35 gtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaaga 134  Q
    |||| |||||| | ||| ||||||||||||| |  ||||||||||| ||||  |||||||||| ||  ||||||||||| ||   ||||||||||||       
T  11298165 gtccttgaatgaagactttgttagtcaattttaaagattaaagtgattaacagagtctacattcaggaactaaattgactaatggagtctgcattcagag 11298066  T
Q  135 attaaattgactaaca 150  Q
    | ||||||||||||||    
T  11298065 actaaattgactaaca 11298050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 31912288 - 31912367
Alignment:
Q  54 gttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||||| ||| |||||||||||||  |||||||| | |  |||||||||||| |||  |||||| |||||||    
T  31912288 gttagtcaatttcatggactaaagtgactaacagagtctacagtaaatgactaaattgactaacggagtctgtattcaag 31912367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 32539375 - 32539429
Alignment:
Q  102 gactaaattgaccaacaaagtctgcattcaagaattaaattgactaacaaagtat 156  Q
    ||||||| |||| |||| ||||| |||||||||| ||||||||||||| ||||||    
T  32539375 gactaaagtgactaacatagtctacattcaagaactaaattgactaacgaagtat 32539429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 30100708 - 30100780
Alignment:
Q  59 tcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    ||||||||||||| ||||||||| |||  |||||||||| || ||||| |||||| ||   ||||||||||||    
T  30100708 tcaatttcagggactaaagtgacaaacagagtctacattcagggactatattgactaatggagtctgcattca 30100780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 5448403 - 5448287
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| |||||||||| |||||||||||| | |||||||||||| |||||||| ||| || ||||||||||||||||  ||||||||| || |    
T  5448403 agtccctgaatgtaaactctgttggtcaatttcaggaactaaagtgactaatgaagtctatattcagggactaaattgaccaacggagtctgcatccagg 5448304  T
Q  134 aattaaattgactaaca 150  Q
     | ||||||||||||||    
T  5448303 gactaaattgactaaca 5448287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 10380680 - 10380783
Alignment:
Q  47 aaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgact 146  Q
    ||||| |||| |||||||||||||| |||||||||||||  |||||||||| || |||||||||||| ||| ||||||||||||| | ||||||||||||    
T  10380680 aaactttgttggtcaatttcagggactaaagtgactaactgagtctacatttagggactaaattgactaacgaagtctgcattcagggattaaattgact 10380779  T
Q  147 aaca 150  Q
    ||||    
T  10380780 aaca 10380783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 18830646 - 18830762
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| | | |||||| |||||||||||||| |||||||||||| | |||||||||| || |||||||||||| ||| ||||||||||||| |    
T  18830646 agtccctgaatgtagattctgttggtcaatttcagggactaaagtgactaatggagtctacattcagggactaaattgactaacgaagtctgcattcagg 18830745  T
Q  134 aattaaattgactaaca 150  Q
     | ||||| ||||||||    
T  18830746 gactaaatggactaaca 18830762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 2634096 - 2634212
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| | ||| | || ||||||||||| || |||||||| |||| ||||||||||| || |||||||||||| |||| |||||||||||| |    
T  2634096 agtccctgaatgtagactttattggtcaatttcagcgactaaagtgattaacaaagtctacattcagggactaaattgacgaacagagtctgcattcagg 2634195  T
Q  134 aattaaattgactaaca 150  Q
     | ||||||||||||||    
T  2634196 gactaaattgactaaca 2634212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 5324761 - 5324871
Alignment:
Q  40 tgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaa 139  Q
    |||||| | |||||||| |||||||||||||| ||||||||| |||  ||| |||||| |  |||||||||||| |||| |||||||||||| ||| |||    
T  5324761 tgaatgtagactctgttggtcaatttcagggactaaagtgacgaacagagtttacattcaaggactaaattgactaacagagtctgcattcatgaactaa 5324860  T
Q  140 attgactaaca 150  Q
    |||||||||||    
T  5324861 attgactaaca 5324871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 11821911 - 11821814
Alignment:
Q  53 tgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    |||| |||||||||||||| |||||||||||||  |||||||||| | ||||||||||||| ||| || |||||||||| | | |||||| |||||||    
T  11821911 tgttggtcaatttcagggactaaagtgactaacagagtctacattcatagactaaattgactaacgaaatctgcattcagggactaaattaactaaca 11821814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 1387369 - 1387470
Alignment:
Q  53 tgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaacaaa 152  Q
    ||||||||||| | ||||| |||||||||||||||||||||||||  |  ||||||||||| |||   || |||||||| ||| |||| |||||||||||    
T  1387369 tgttagtcaatattagggactaaagtgactaacgaagtctacattccggaactaaattgactaacggggtttgcattcaggaactaaagtgactaacaaa 1387468  T
Q  153 gt 154  Q
    ||    
T  1387469 gt 1387470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 22017954 - 22018051
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    |||||||||||| | | |||||| |||||||||| ||| |||||||| ||||| ||| |||||| ||||||||||| ||| |||| ||||| ||||||    
T  22017954 agtccctgaatgtatattctgttggtcaatttcaaggactaaagtgattaacggagtatacattcagagactaaatagactaacatagtctacattca 22018051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 2063353 - 2063237
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| | |||||||| |||||||| |  || ||||||||||||| || |||||||| || |||||||||||| |||  ||| ||||||||      
T  2063353 agtccctgaatgtagactctgttggtcaattttaaagactaaagtgactaacaaattctacatttagggactaaattgactaacggagtttgcattcaga 2063254  T
Q  134 aattaaattgactaaca 150  Q
     | ||||||||||||||    
T  2063253 gactaaattgactaaca 2063237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 3370132 - 3370056
Alignment:
Q  74 aaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    |||||||||||   |||||||||| ||||||||||||||| ||| ||||||||||||| | | ||||||||||||||    
T  3370132 aaagtgactaatagagtctacattaagagactaaattgactaacgaagtctgcattcagggactaaattgactaaca 3370056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 1387444 - 1387511
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    |||||| | ||||||||||||| ||||||||||| || |||||||||||| |||| ||||||||||||    
T  1387444 ttcaggaactaaagtgactaacaaagtctacattcagcgactaaattgactaacagagtctgcattca 1387511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 9826824 - 9826717
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaa 148  Q
    ||||||||||||||||||| ||||||| |||||||||  |||||| ||| || || ||||||||  ||| |||||||||||||   | ||| ||||||||    
T  9826824 actctgttagtcaatttcaaggattaatgtgactaactgagtctaaattcagggattaaattgattaacgaagtctgcattcagatactaagttgactaa 9826725  T
Q  149 caaagtat 156  Q
    || |||||    
T  9826724 catagtat 9826717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 37695034 - 37695120
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    |||||||| |||| |||||||||  |||| |||| || || ||||||||| |||| |||||||||||||  ||||||||||||||||    
T  37695034 ttcagggactaaattgactaacggggtctgcatttagggattaaattgactaacagagtctgcattcaacgattaaattgactaaca 37695120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 30470909 - 30471006
Alignment:
Q  53 tgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    |||| |||||||||||||| |||||||||||||  |||||||||| |  |||||||||||  |||  |||||||||||| | | |||||||| |||||    
T  30470909 tgttggtcaatttcagggactaaagtgactaacagagtctacattcaatgactaaattgattaacggagtctgcattcagggactaaattgattaaca 30471006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 18500787 - 18500691
Alignment:
Q  52 ctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaa 148  Q
    ||||| ||||||||||| || |||||||| ||||  |||||| ||| || |||||||||||| |||| ||||| |||||| | ||||||||| ||||    
T  18500787 ctgttggtcaatttcagagactaaagtgattaacagagtctaaattcagggactaaattgactaacagagtctacattcagggattaaattggctaa 18500691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 10757661 - 10757739
Alignment:
Q  53 tgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    |||| |||||| |||||||||| ||||| ||||  |||||||||| || |||||||||||| |||  ||||||||||||    
T  10757661 tgttggtcaatctcagggattatagtgattaacagagtctacattcagggactaaattgactaacggagtctgcattca 10757739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 10970832 - 10970910
Alignment:
Q  53 tgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    |||| |||||| |||||||||| ||||| ||||  |||||||||| || |||||||||||| |||  ||||||||||||    
T  10970832 tgttggtcaatctcagggattatagtgattaacagagtctacattcagggactaaattgactaacggagtctgcattca 10970910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 47144883 - 47144781
Alignment:
Q  47 aaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgact 146  Q
    ||||| ||||||||||||||| ||| ||||||||| |||| ||||| |||| ||  ||||||||||  |||  |||||  ||||||| | ||||||||||    
T  47144883 aaactttgttagtcaatttcaaggactaaagtgaccaacggagtctgcattcaggaactaaattgattaacggagtctttattcaaggactaaattgact 47144784  T
Q  147 aac 149  Q
    |||    
T  47144783 aac 47144781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 18836351 - 18836466
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    ||||||| ||||  ||| ||||| |||||||| | ||| |||||||||||| | |||||||||| || ||||||| |||| |||  |||||||||||| |    
T  18836351 agtccctaaatgttaacgctgttggtcaattttatggactaaagtgactaatggagtctacattcagggactaaa-tgactaacggagtctgcattcagg 18836449  T
Q  134 aattaaattgactaaca 150  Q
     | ||||| ||||||||    
T  18836450 gactaaatggactaaca 18836466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 37694972 - 37695088
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| | | | |||| |||||||| || || ||||||||||||   |||||| ||| || |||||||||||| |||   ||||||||| | |    
T  37694972 agtccctgaatgtagattgtgttggtcaatttaagtgactaaagtgactaatagagtctatattcagggactaaattgactaacggggtctgcatttagg 37695071  T
Q  134 aattaaattgactaaca 150  Q
     ||||||||||||||||    
T  37695072 gattaaattgactaaca 37695088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 2232461 - 2232558
Alignment:
Q  51 tctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    |||||| |||||||||||||| |||||||| |||  ||||||||||| || |||||||||| | |||| ||||| ||  || | ||||||||||||||||    
T  2232461 tctgttggtcaatttcagggactaaagtgattaa-aaagtctacattcagggactaaattggctaacagagtct-caaccagggattaaattgactaaca 2232558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 8951098 - 8951189
Alignment:
Q  40 tgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    |||||| | |||| ||| |||||||| ||  | |||| |||||||||||||||||||| ||  ||||||||||| |||||| ||| ||||||    
T  8951098 tgaatgtagactcagttggtcaatttaagaaactaaaatgactaacgaagtctacattaaggaactaaattgactaacaaaatctacattca 8951189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 18830708 - 18830777
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||| |||| ||||||||||||||| |||| || |||||||| ||| |||| | ||| ||||||||    
T  18830708 ttcagggactaaattgactaacgaagtctgcattcagggactaaatggactaacagaatctacattcaag 18830777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 30378924 - 30378852
Alignment:
Q  58 gtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    |||||||||||  | |||||||||||||| |||||| ||| || |||| ||||||| |||| ||||||||||||    
T  30378924 gtcaatttcagacactaaagtgactaacggagtcta-attcagggactgaattgactaacagagtctgcattca 30378852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 47943539 - 47943640
Alignment:
Q  53 tgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaacaaa 152  Q
    |||| |||||||| ||||| || ||||| ||||  |||||||||| || || ||||||||| |||     ||||||||||||| ||||||||||||| ||    
T  47943539 tgttggtcaattttagggactatagtgattaacatagtctacattcagggattaaattgactaacggttcctgcattcaagaactaaattgactaaccaa 47943638  T
Q  153 gt 154  Q
    ||    
T  47943639 gt 47943640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 55382667 - 55382748
Alignment:
Q  73 taaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaacaaagt 154  Q
    |||||||||||||| |||||||||  || |||||||||||| |||  | |||||||| | | |  |||||||||||||||||    
T  55382667 taaagtgactaacggagtctacatccagggactaaattgactaacggaatctgcatttagggacaaaattgactaacaaagt 55382748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 3370101 - 3370045
Alignment:
Q  73 taaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcatt 129  Q
    |||| ||||||||||||||| |||| || |||||||||||| |||| ||||| ||||    
T  3370101 taaattgactaacgaagtctgcattcagggactaaattgactaacagagtctacatt 3370045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 149
Target Start/End: Original strand, 911 - 1022
Alignment:
Q  38 cctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaatt 137  Q
    |||||||| | ||||| ||||||||||||||||| ||||||||||||| ||||||||||| || || ||||||||| ||| ||||||||||||| | | |    
T  911 cctgaatgtagactctattagtcaatttcagggactaaagtgactaacaaagtctacattcagggattaaattgactaacgaagtctgcattcagggact 1010  T
Q  138 aaattgactaac 149  Q
    ||||||||||||    
T  1011 aaattgactaac 1022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 149
Target Start/End: Original strand, 7375 - 7486
Alignment:
Q  38 cctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaatt 137  Q
    |||||||| | ||||| ||||||||||||||||| ||||||||||||| ||||||||||| || || ||||||||| ||| ||||||||||||| | | |    
T  7375 cctgaatgtagactctattagtcaatttcagggactaaagtgactaacaaagtctacattcagggattaaattgactaacgaagtctgcattcagggact 7474  T
Q  138 aaattgactaac 149  Q
    ||||||||||||    
T  7475 aaattgactaac 7486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 969 - 1059
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaacaaagt 154  Q
    ||||||||||||| ||||||||||||||| |||| || |||||||||||| ||| || |||||||||| | | |||||||| ||| |||||    
T  969 ttcagggattaaattgactaacgaagtctgcattcagggactaaattgactaacgaaatctgcattcagggactaaattgaataataaagt 1059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 7433 - 7523
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaacaaagt 154  Q
    ||||||||||||| ||||||||||||||| |||| || |||||||||||| ||| || |||||||||| | | |||||||| ||| |||||    
T  7433 ttcagggattaaattgactaacgaagtctgcattcagggactaaattgactaacgaaatctgcattcagggactaaattgaataataaagt 7523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 943 - 995
Alignment:
Q  102 gactaaattgaccaacaaagtctgcattcaagaattaaattgactaacaaagt 154  Q
    ||||||| |||| |||||||||| |||||| | ||||||||||||||| ||||    
T  943 gactaaagtgactaacaaagtctacattcagggattaaattgactaacgaagt 995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 7407 - 7459
Alignment:
Q  102 gactaaattgaccaacaaagtctgcattcaagaattaaattgactaacaaagt 154  Q
    ||||||| |||| |||||||||| |||||| | ||||||||||||||| ||||    
T  7407 gactaaagtgactaacaaagtctacattcagggattaaattgactaacgaagt 7459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 190250 - 190370
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||| ||||||| | |||||||| ||||||||||||||||||| ||| ||||  ||| |||||| || |||||||||||| |||| |||||| ||||| |    
T  190250 agtctctgaatgtagactctgttggtcaatttcagggattaaattgattaacatagtttacatttagggactaaattgactaacagagtctgtattcagg 190349  T
Q  134 aattaaattgactaacaaagt 154  Q
    || ||||||||||||||||||    
T  190350 aactaaattgactaacaaagt 190370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 31254111 - 31253995
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    ||||| |||||| | |||| ||| || ||||||||||||||||||||||||| || |||||||| || |||||||||||| |||| |||||||||||| |    
T  31254111 agtccttgaatgtagactccgttggttaatttcagggattaaagtgactaacaaaatctacatttagggactaaattgactaacagagtctgcattcagg 31254012  T
Q  134 aattaaattgactaaca 150  Q
     | ||||||||||||||    
T  31254011 gactaaattgactaaca 31253995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 35202806 - 35202689
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattga-gagactaaattgaccaacaaagtctgcattcaa 132  Q
    ||||||||||||   |||||||| |||||||||||| | |||||||||||||| |||||||||| | | |||||||||||| |||| | ||||||||||     
T  35202806 agtccctgaatgtttactctgttggtcaatttcaggaactaaagtgactaacggagtctacattcaggggactaaattgactaacagaatctgcattcag 35202707  T
Q  133 gaattaaattgactaaca 150  Q
    ||| ||||||||||||||    
T  35202706 gaactaaattgactaaca 35202689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 23976163 - 23976279
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| | ||||||||||||||||||||||| |||||||||||||    |||||||| || | ||||||||||||||  |||||||||||| |    
T  23976163 agtccctgaatgtagactctgttagtcaatttcagggagtaaagtgactaacatgatctacattcaggggctaaattgaccaacggagtctgcattcagg 23976262  T
Q  134 aattaaattgactaaca 150  Q
       ||||||||||||||    
T  23976263 ggctaaattgactaaca 23976279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 22469505 - 22469620
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||||| |||||||| |||||||||||||||||| |||||||||| ||| || ||| || |||||||||||| ||   ||| || ||||| |    
T  22469505 agtccctgaatgcagactctgttggtcaatttcagggattaaggtgactaacggagttta-attcagggactaaattgactaatggagtttgaattcagg 22469603  T
Q  134 aattaaattgactaaca 150  Q
     ||||||||||||||||    
T  22469604 gattaaattgactaaca 22469620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 25149310 - 25149430
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| | |||||||| |||||||||| ||| ||||||||| ||||  |||||| || || |||||| ||||| |||| ||||||||||||      
T  25149310 agtccctgaatgtagactctgttggtcaatttcaaggactaaagtgacgaacggtgtctacgttcagggactaacttgactaacagagtctgcattcaga 25149409  T
Q  134 aattaaattgactaacaaagt 154  Q
     | ||||||||||||||||||    
T  25149410 gactaaattgactaacaaagt 25149430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 4289018 - 4289113
Alignment:
Q  55 ttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    |||||||||||||||||||||||||||||||  |||||||||| | ||||||||||||  |||| |||||||||| |   | ||||||||||||||    
T  4289018 ttagtcaatttcagggattaaagtgactaacagagtctacattcaaagactaaattgattaacatagtctgcatttagagactaaattgactaaca 4289113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 41358775 - 41358870
Alignment:
Q  55 ttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    |||||||||||||| || ||||||||||||| ||||||||||| |||||| ||| | || || |||||||||||||| | | |||||||| |||||    
T  41358775 ttagtcaatttcagagactaaagtgactaacaaagtctacattcagagacaaaagtaacaaataaagtctgcattcatggactaaattgattaaca 41358870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 37543870 - 37543984
Alignment:
Q  40 tgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaa 139  Q
    |||||| ||||| | || |||||||||| ||| |||||||| ||||| |||||| ||| || ||||||||| || |||  | |||||||||| | |||||    
T  37543870 tgaatgtaaactttattggtcaatttcatggactaaagtgattaacggagtctatattcagggactaaattaactaacggaatctgcattcagggattaa 37543969  T
Q  140 attgactaacaaagt 154  Q
    |||||||||||||||    
T  37543970 attgactaacaaagt 37543984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 18324189 - 18324084
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaa 148  Q
    |||||| | |||||||||| | | |||||||||||||| |||||||||| |  |||||||||||| |||  ||| |||||||| ||| ||||||||||||    
T  18324189 actctgctggtcaatttcatgaactaaagtgactaacggagtctacatttaaggactaaattgactaacggagtttgcattcaggaactaaattgactaa 18324090  T
Q  149 caaagt 154  Q
     |||||    
T  18324089 taaagt 18324084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 29585574 - 29585642
Alignment:
Q  86 gaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaacaaagt 154  Q
    |||||||||||| || |||||||||||| ||||||||||||||||| | | |||||||| |||||||||    
T  29585574 gaagtctacattcagggactaaattgactaacaaagtctgcattcagggactaaattgaataacaaagt 29585642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 12106939 - 12107012
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaa 107  Q
    |||||||| ||| | |||||||| |||||||||||||| ||||||||| |||| |||||||||| || ||||||    
T  12106939 agtccctggatgtagactctgttggtcaatttcagggactaaagtgacgaacgcagtctacatttagggactaa 12107012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 24609134 - 24609214
Alignment:
Q  70 gattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    |||||||| ||||||   |||||||||| |||||||||||| |  |||| |||||||||| ||||| ||||||||||||||    
T  24609134 gattaaagcgactaattgagtctacattcagagactaaattaattaacagagtctgcatttaagaactaaattgactaaca 24609214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 21124500 - 21124420
Alignment:
Q  68 gggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaa 148  Q
    |||| |||| ||||||||| |||||||| |  | |||||||||||| ||| ||||||||||||| | | ||||||||||||    
T  21124500 gggactaaattgactaacggagtctacactaggggactaaattgactaacgaagtctgcattcagggactaaattgactaa 21124420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 25149372 - 25149439
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    |||||||| |||  ||||||||  ||||| |||| ||||||||||||||| |||||||||| ||||||    
T  25149372 ttcagggactaacttgactaacagagtctgcattcagagactaaattgactaacaaagtctacattca 25149439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 29585584 - 29585651
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    |||||||| |||| |||||||| |||||| |||| || |||||||||||  |||||||||| ||||||    
T  29585584 ttcagggactaaattgactaacaaagtctgcattcagggactaaattgaataacaaagtctacattca 29585651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 31254005 - 31254039
Alignment:
Q  31 tttagtccctgaatgcaaactctgttagtcaattt 65  Q
    ||||||||||||||||| |||||||||||||||||    
T  31254005 tttagtccctgaatgcagactctgttagtcaattt 31254039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 37494396 - 37494465
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaaca 118  Q
    |||||||| |||||||| ||||| | || ||||||| ||||||| |||| || |||||||||||| ||||    
T  37494396 actctgttggtcaattttagggagtgaattgactaatgaagtctgcattcagggactaaattgactaaca 37494465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 37608178 - 37608063
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| |||  ||||| ||||||||||||||  ||||||||||||| |||||||||| |  |||||||||||| |||| ||||||||||||||    
T  37608178 agtccctgaatgtaaaa-ctgttggtcaatttcagggaccaaagtgactaacggagtctacattcaaggactaaattgactaacagagtctgcattcaag 37608080  T
Q  134 aattaaattgactaaca 150  Q
     | ||||||||||||||    
T  37608079 gactaaattgactaaca 37608063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 50335648 - 50335528
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| | |||||||| |||||||| ||||| |||||||| || || |||||||||| || |||||||||||| |||  |||||||||||| |    
T  50335648 agtccctgaatgtagactctgttggtcaattttagggactaaagtgattagcggagtctacattcagggactaaattgacgaacggagtctgcattcagg 50335549  T
Q  134 aattaaattgactaacaaagt 154  Q
     | ||||||||||||||||||    
T  50335548 gactaaattgactaacaaagt 50335528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 13735653 - 13735536
Alignment:
Q  34 agtccctgaatgcaaactctgttag-tcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaa 132  Q
    |||||||||||| | |||||||| | ||||||||||||| |||||||||||||| |||||||||| |  |||||||||||| |||  ||||||||||||     
T  13735653 agtccctgaatgtagactctgtttgatcaatttcagggactaaagtgactaacggagtctacatttattgactaaattgactaacggagtctgcattcag 13735554  T
Q  133 gaattaaattgactaaca 150  Q
      | ||||||||||||||    
T  13735553 agactaaattgactaaca 13735536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 32374144 - 32374110
Alignment:
Q  31 tttagtccctgaatgcaaactctgttagtcaattt 65  Q
    |||||||||||||||||||||||||||||||||||    
T  32374144 tttagtccctgaatgcaaactctgttagtcaattt 32374110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 50335586 - 50335519
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    |||||||| |||| |||| |||| ||||| |||| || |||||||||||| |||||||||| ||||||    
T  50335586 ttcagggactaaattgacgaacggagtctgcattcagggactaaattgactaacaaagtctacattca 50335519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 13735581 - 13735525
Alignment:
Q  73 taaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcatt 129  Q
    |||| ||||||||| ||||| |||| ||||||||||||||| |||| ||||| ||||    
T  13735581 taaattgactaacggagtctgcattcagagactaaattgactaacagagtctacatt 13735525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 32374092 - 32374152
Alignment:
Q  88 agtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaa 148  Q
    |||||||||| || |||||||||||| |||| ||| |||||||| | | ||||||||||||    
T  32374092 agtctacattcagggactaaattgactaacagagtttgcattcagggactaaattgactaa 32374152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 31820104 - 31820005
Alignment:
Q  51 tctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    ||||||||||||||| ||||| |||||||| ||||| ||| |||||| ||||||||||||||| || |||||||||||||||| | ||||| ||||||||    
T  31820104 tctgttagtcaattttagggactaaagtgattaacggagtatacattcagagactaaattgactaagaaagtctgcattcaaggactaaatggactaaca 31820005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 32092831 - 32092928
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    |||||||||||| | |||||||| |||||| ||||| | ||||||||||||||||||||||||| || |||||||||||| |||| ||||| ||||||    
T  32092831 agtccctgaatgtagactctgtttgtcaatctcaggaactaaagtgactaacgaagtctacattcagggactaaattgactaacagagtctacattca 32092928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 17914174 - 17914076
Alignment:
Q  40 tgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaatta 138  Q
    |||||| | ||||| ||||||||||| || |||||||||||||||| || |||||||| || | |||||||||| |||||| ||| |||||||| ||||    
T  17914174 tgaatgtagactctattagtcaattttagtgattaaagtgactaacaaaatctacatttagggtctaaattgactaacaaaatctacattcaaggatta 17914076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 39598585 - 39598699
Alignment:
Q  40 tgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaa 139  Q
    |||||| | ||| ||||||||||||| ||||| |||||||||||||| |||||||||| || |||||||||||| |||  ||| | ||||||   | |||    
T  39598585 tgaatgtagactttgttagtcaattttagggactaaagtgactaacggagtctacattcagggactaaattgactaacggagtatacattcagcgactaa 39598684  T
Q  140 attgactaacaaagt 154  Q
    |||||| ||||||||    
T  39598685 attgaccaacaaagt 39598699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 22093067 - 22092951
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||| ||||||| | | |||||| ||||| |||||||| ||||||||| |||| |||||| ||| || |||||||||||| ||   |||||||||||| |    
T  22093067 agtctctgaatgtagattctgttggtcaaattcagggactaaagtgacaaacggagtctatattcagggactaaattgacgaatggagtctgcattcagg 22092968  T
Q  134 aattaaattgactaaca 150  Q
    || |||| |||||||||    
T  22092967 aactaaactgactaaca 22092951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 39598641 - 39598708
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    |||||||| |||| ||||||||| ||| |||||| || ||||||||||||||||||||||| ||||||    
T  39598641 ttcagggactaaattgactaacggagtatacattcagcgactaaattgaccaacaaagtctacattca 39598708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 8219284 - 8219214
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaaga 134  Q
    ||||||||||||| ||||||||| ||||| |||| ||| ||||||||||| |||| ||||| |||||||||    
T  8219284 ttcagggattaaattgactaacggagtctgcattcagaaactaaattgactaacagagtctacattcaaga 8219214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 24006952 - 24007068
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| | ||||||||| |||||||||| || |||| ||| ||||  |||||||||| ||  |||| ||||| ||||  | |||||||||| |    
T  24006952 agtccctgaatgtagactctgttactcaatttcagagactaaaatgattaacagagtctacattcaggtactacattgatcaacggaatctgcattcatg 24007051  T
Q  134 aattaaattgactaaca 150  Q
     | ||||||||||||||    
T  24007052 gactaaattgactaaca 24007068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 31499441 - 31499538
Alignment:
Q  53 tgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    |||| ||||||||||||||  |||||||| ||  ||||||||||| |  |||||||||||| |||  ||||||||||||  || |||| |||||||||    
T  31499441 tgttggtcaatttcagggaccaaagtgacaaataaagtctacattcaaggactaaattgactaacggagtctgcattcagaaactaaaatgactaaca 31499538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 8219304 - 8219230
Alignment:
Q  76 agtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    ||||||||||| |||| ||||| || || ||||||||| |||  ||||||||||||  || ||||||||||||||    
T  8219304 agtgactaacggagtccacattcagggattaaattgactaacggagtctgcattcagaaactaaattgactaaca 8219230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 19295372 - 19295469
Alignment:
Q  53 tgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||| || |||||||||||| ||  ||||||||||||| | | ||||||||||||||    
T  19295372 tgttagtcaatttcagggactaaagtgaccaacggagtctacattcagggactaaattgactaatgaagtctgcattcagggactaaattgactaaca 19295469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 21222552 - 21222659
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaa 148  Q
    ||||||||||||||||||| ||||||| |||||||||  |||||||||| || |||||||||||| ||| |||||||||||||   | ||| ||||||||    
T  21222552 actctgttagtcaatttcaaggattaatgtgactaactgagtctacattcagggactaaattgactaacgaagtctgcattcagagactaagttgactaa 21222651  T
Q  149 caaagtat 156  Q
    || |||||    
T  21222652 catagtat 21222659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 25089340 - 25089243
Alignment:
Q  53 tgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    |||| |||||||||| ||| |||||||||||| |||||||||||| || |||||||||||| ||   |||||||||||||  | ||||||||||||||    
T  25089340 tgttggtcaatttcatggactaaagtgactaatgaagtctacattcagggactaaattgactaatggagtctgcattcaatgactaaattgactaaca 25089243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 10672690 - 10672808
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaag 133  Q
    |||||||||||| | ||| |||| || ||||||||| | || |||||||||||||||||||||| || |||||||||||| ||| || | ||||||||      
T  10672690 agtccctgaatgtagactatgttggtaaatttcaggaactatagtgactaacgaagtctacattcagggactaaattgactaacgaaatatgcattcaga 10672789  T
Q  134 aattaaattgactaacaaa 152  Q
     | |||||||| |||||||    
T  10672790 gactaaattgattaacaaa 10672808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 13536768 - 13536651
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattga-gagactaaattgaccaacaaagtctgcattcaa 132  Q
    |||||||||||| | ||||| || ||| |||||||||| |||||||||||||  |||||||||| | | | |||||||||| |||  ||||||||||||     
T  13536768 agtccctgaatgtagactctattggtccatttcagggactaaagtgactaacagagtctacattcagggggctaaattgactaacggagtctgcattcag 13536669  T
Q  133 gaattaaattgactaaca 150  Q
    | | ||||||||||||||    
T  13536668 ggactaaattgactaaca 13536651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 10862196 - 10862104
Alignment:
Q  58 gtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    |||||||||||||| ||||||||| |||  |||||| ||| || |||||||||||| |||  ||||||| |||| | ||| ||||||||||||    
T  10862196 gtcaatttcagggactaaagtgacgaacagagtctatattcagggactaaattgactaacggagtctgccttcagggattgaattgactaaca 10862104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 19295415 - 19295482
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    |||||||| |||| ||||||| ||||||| |||| || |||||||||||| |||| ||||||||||||    
T  19295415 ttcagggactaaattgactaatgaagtctgcattcagggactaaattgactaacagagtctgcattca 19295482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 26705235 - 26705156
Alignment:
Q  34 agtccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgac 113  Q
    |||||||||||| | ||  |||| |||||||||||||| ||||||||||||||   |||||||| || ||||||||||||    
T  26705235 agtccctgaatgtagacgttgttggtcaatttcagggactaaagtgactaacgggttctacattcagggactaaattgac 26705156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 12651194 - 12651269
Alignment:
Q  73 taaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaac 149  Q
    ||||||||||||| ||||||||||  ||||||||||||||| |||| |||| ||||||| | |  ||||||||||||    
T  12651194 taaagtgactaacaaagtctacatc-agagactaaattgactaacagagtcggcattcagggaccaaattgactaac 12651269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 21222599 - 21222666
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    |||||||| |||| ||||||||||||||| |||| ||||||||| ||||| |||| ||| | ||||||    
T  21222599 ttcagggactaaattgactaacgaagtctgcattcagagactaagttgactaacatagtatacattca 21222666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 19295489 - 19295457
Alignment:
Q  33 tagtccctgaatgcaaactctgttagtcaattt 65  Q
    ||||||||||||||| |||||||||||||||||    
T  19295489 tagtccctgaatgcagactctgttagtcaattt 19295457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 26705173 - 26705089
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaa 148  Q
    |||||||| |||| ||||||||| | |||| ||| || |||||||||||  ||| || |||||||||| | | ||||||||||||    
T  26705173 ttcagggactaaattgactaacggattctatattcagggactaaattgattaacgaaatctgcattcagggactaaattgactaa 26705089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 24097 - 23984
Alignment:
Q  36 tccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaa 135  Q
    |||||||||| | | |||||| |||||||||| |||  |||||||| ||  ||||||||||| |  ||||||||||||||||| |||||||||||| | |    
T  24097 tccctgaatgtagattctgttggtcaatttcatggacaaaagtgacgaataaagtctacattcaaggactaaattgaccaacagagtctgcattcaggga 23998  T
Q  136 ttaaattgactaac 149  Q
     |||||||||||||    
T  23997 ctaaattgactaac 23984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 314270 - 314169
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaa 148  Q
    |||||||| || ||||||||||| |||||||||||||  | |||||||| || |||||||||||| |||  |||||||||||| | | ||||||||||||    
T  314270 actctgttggttaatttcagggactaaagtgactaacagactctacattcagggactaaattgactaacggagtctgcattcagggactaaattgactaa 314171  T
Q  149 ca 150  Q
    ||    
T  314170 ca 314169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 314223 - 314158
Alignment:
Q  64 ttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcatt 129  Q
    |||||||| |||| ||||||||| ||||| |||| || |||||||||||| |||| ||||| ||||    
T  314223 ttcagggactaaattgactaacggagtctgcattcagggactaaattgactaacagagtctacatt 314158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 59780 - 59855
Alignment:
Q  37 ccctgaatgcaaactctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattga 112  Q
    ||||||||| | ||||||||||||||||||||||| |||| ||||||||| ||||| |||| || |||||||||||    
T  59780 ccctgaatgtagactctgttagtcaatttcagggactaaattgactaacggagtctgcattcagggactaaattga 59855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 57641 - 57534
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaa 148  Q
    ||||||||||||||||||| ||||||| |||||||||  |||||| ||| || |||||||||||  ||| |||||||||||||   | ||| ||||||||    
T  57641 actctgttagtcaatttcaaggattaatgtgactaactgagtctaaattcagggactaaattgattaacgaagtctgcattcagatactaagttgactaa 57542  T
Q  149 caaagtat 156  Q
    || |||||    
T  57541 catagtat 57534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 1542 - 1460
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    ||||||||||||||||||| ||||||| ||||||||   |||||||||| || ||||||||| || ||| |||||||||||||    
T  1542 actctgttagtcaatttcaaggattaatgtgactaattgagtctacattcagggactaaattaactaacgaagtctgcattca 1460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 127996 - 127889
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaa 148  Q
    ||||||||||||||||||| ||||||| |||||||||  |||||| |||  | || ||||||||  ||| |||||||||||||   | ||| ||||||||    
T  127996 actctgttagtcaatttcaaggattaatgtgactaactgagtctaaattctgggattaaattgattaacgaagtctgcattcagatactaagttgactaa 127897  T
Q  149 caaagtat 156  Q
    || |||||    
T  127896 catagtat 127889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 27576 - 27624
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacatt 97  Q
    |||||||| |||||||||| ||| ||||||||| |||||||||||||||    
T  27576 actctgttggtcaatttcaaggactaaagtgacgaacgaagtctacatt 27624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 11765 - 11683
Alignment:
Q  49 actctgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattca 131  Q
    ||||| ||||||||||| ||||| |||||||||||||  | | |||||| ||||| ||||||| | |||| ||||| ||||||    
T  11765 actctcttagtcaattttagggactaaagtgactaacagaatatacattcagagattaaattgcctaacatagtctacattca 11683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 72015 - 72049
Alignment:
Q  31 tttagtccctgaatgcaaactctgttagtcaattt 65  Q
    ||||||||||||||||||||| |||||||||||||    
T  72015 tttagtccctgaatgcaaactttgttagtcaattt 72049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 15553 - 15456
Alignment:
Q  53 tgttagtcaatttcagggattaaagtgactaacgaagtctacattgagagactaaattgaccaacaaagtctgcattcaagaattaaattgactaaca 150  Q
    ||||||||||||||||| | ||||  |||| ||  | |||||||| ||||||||||||| | |||  ||||| ||||||   ||||||||||||||||    
T  15553 tgttagtcaatttcaggtactaaaacgactgacagaatctacattcagagactaaattggctaacggagtctacattcagagattaaattgactaaca 15456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University