View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17993_high_12 (Length: 265)
Name: NF17993_high_12
Description: NF17993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17993_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 4827557 - 4827805
Alignment:
| Q |
1 |
gatgaaaaatatatccaacttgtaccaaaccaattgatgaagcatagacgacaaaatatatgtttgaccaacatctttatgcaacactatcatataaaca |
100 |
Q |
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| T |
4827557 |
gatgaaaaatatatccaacttgtaccaaaccaattgatgaagcatagatgacaaaatatatgtttgaccaacatctttatgcaacactatcatataaaca |
4827656 |
T |
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| Q |
101 |
ttcaatgtaatttgactttggcttcacagcaatgtcaattcagttacttggaatactggcaatgtatattacctttttgtcttctgaatctccaaaatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4827657 |
ttcaatgtaatttgactttggcttcacagcaatgtcaattcagttacttggaatactggcaatgtatattacctttttgtcttctgaatctccaaaatgc |
4827756 |
T |
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| Q |
201 |
aagagagatcaagagcattacaactaatcctgaaagtgatccaataatt |
249 |
Q |
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| T |
4827757 |
aagagagatcaagaggattacaactaatcctgaaagtgatccaataatt |
4827805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 4727933 - 4727876
Alignment:
| Q |
170 |
tacctttttgtcttctgaatctccaaaatgcaagagagatcaagagcattacaactaa |
227 |
Q |
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| T |
4727933 |
tacctttttgtcttctgaatatccaaaatccaagagaaatcaaaaggattacaactaa |
4727876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 4751822 - 4751757
Alignment:
| Q |
170 |
tacctttttgtcttctgaatctccaaaatgcaagagagatcaagagcattacaactaatcctgaaa |
235 |
Q |
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| T |
4751822 |
tacctttttgtcttctgaatatccaaaatccaaaagaaatcaaaaggattacaactaatgctgaaa |
4751757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 4872224 - 4872301
Alignment:
| Q |
170 |
tacctttttgtcttctgaatctccaaaatgcaagagagatcaagagcattacaactaatcctgaaagtgatccaataa |
247 |
Q |
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|||||||||||||||||||| |||||||| ||||||| ||||| || ||| ||| |||| ||||| |||| |||||| |
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| T |
4872224 |
tacctttttgtcttctgaatatccaaaatccaagagaaatcaaaaggattgcaattaatgttgaaaatgatgcaataa |
4872301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 4690719 - 4690649
Alignment:
| Q |
170 |
tacctttttgtcttctgaatctccaaaatgcaagagagatcaagagcattacaactaatcctgaaagtgat |
240 |
Q |
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| T |
4690719 |
tacctttctgtcttctcaatatccaaagtccaagagaaatcaagacgattacaactaatgctgaaaatgat |
4690649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 4738449 - 4738384
Alignment:
| Q |
170 |
tacctttttgtcttctgaatctccaaaatgcaagagagatcaagagcattacaactaatcctgaaa |
235 |
Q |
| |
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|||||||||||||||||||| |||||||| ||| ||| || || | |||||||||||| |||||| |
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| T |
4738449 |
tacctttttgtcttctgaatatccaaaatccaaaagaaataaaaatgattacaactaatgctgaaa |
4738384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 4888428 - 4888505
Alignment:
| Q |
170 |
tacctttttgtcttctgaatctccaaaatgcaagagagatcaagagcattacaactaatcctgaaagtgatccaataa |
247 |
Q |
| |
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||||| ||||||||||||| ||| |||| ||||||| |||||||| ||||||| ||| |||||| |||| |||||| |
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| T |
4888428 |
tacctgtttgtcttctgaacatccgaaatccaagagaaatcaagaggattacaataaatgctgaaaatgatgcaataa |
4888505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 4921220 - 4921297
Alignment:
| Q |
170 |
tacctttttgtcttctgaatctccaaaatgcaagagagatcaagagcattacaactaatcctgaaagtgatccaataa |
247 |
Q |
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||||||| |||||||||||| |||||||| ||||||| ||||| || || |||| |||| | |||| |||| |||||| |
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| T |
4921220 |
tacctttctgtcttctgaatatccaaaatccaagagaaatcaataggataacaattaatgcagaaaatgatgcaataa |
4921297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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