View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17993_high_15 (Length: 241)
Name: NF17993_high_15
Description: NF17993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17993_high_15 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 40604770 - 40604992
Alignment:
| Q |
19 |
ttcaatgaagttttgtcaaccgccatggccaatttgtgaaggacggagtgaccaggatgtcttgtggtggatatgacagggccatatggttgatttttgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40604770 |
ttcaatgaagttttgtcaaccgccatggccaatttgtgaaggacggagtgaccaggatgtcttgtggtggatatgacagggccatatggttgatttttgg |
40604869 |
T |
|
| Q |
119 |
ctttcagccatgttccgccatcaataactctggaaatgacacccctctattatgcaaaagacagtaatctccctttaattagacaaaccctctacaaggg |
218 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40604870 |
ctttcagccatggtccgccatcaataactctggaaatgacacccctctattctgcaaaagacagtaatctccctttaattagacaaaccctctacaaggg |
40604969 |
T |
|
| Q |
219 |
atgcatgcatgatttaagcgcat |
241 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
40604970 |
atgcatgcatgatttaagcgcat |
40604992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 41189799 - 41189666
Alignment:
| Q |
29 |
ttttgtcaaccgccatggccaatttgtgaaggacggagtgaccaggatgtcttgtggtggatatgacagggccatatggttgatttttggctttcagcca |
128 |
Q |
| |
|
||||| |||| ||||| |||||||||||||||||| | |||||||||||||||||| | |||||||| ||||||||||| ||||||||||||| | || |
|
|
| T |
41189799 |
ttttgacaactgccattaccaatttgtgaaggacggcgggaccaggatgtcttgtggcgaatatgacaaggccatatggtggatttttggcttttcgtca |
41189700 |
T |
|
| Q |
129 |
tgttccgccatcaataactctggaaatgacaccc |
162 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||| |
|
|
| T |
41189699 |
tggtccgccattgataactctggaaatgacaccc |
41189666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 41190951 - 41190858
Alignment:
| Q |
142 |
ataactctggaaatgacacccctctattatgcaaaagacagtaatctccctttaattagacaaaccctctacaagggatgcatgcatgatttaagc |
237 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||| | ||||||||| ||| ||| |||||||||||||||||||| | |||||||||| |
|
|
| T |
41190951 |
ataactctggaaattacacccctctattttgcaaaagacatttatctcccttcaat--cacacaccctctacaagggatgcattcgtgatttaagc |
41190858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 40603752 - 40603831
Alignment:
| Q |
142 |
ataactctggaaatgacacccctctattatgcaaaagacagtaatctccctttaattagacaaaccctctacaagggatg |
221 |
Q |
| |
|
|||||||||||||| |||||||||| || || |||||||| | ||||||||| ||| | ||| | ||||||||||||||| |
|
|
| T |
40603752 |
ataactctggaaattacacccctctgttttgaaaaagacatttatctcccttcaatcacacacatcctctacaagggatg |
40603831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University