View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17993_high_17 (Length: 231)

Name: NF17993_high_17
Description: NF17993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17993_high_17
NF17993_high_17
[»] chr7 (12 HSPs)
chr7 (9-218)||(22879155-22879364)
chr7 (9-218)||(22896787-22896996)
chr7 (9-218)||(22892471-22892680)
chr7 (9-218)||(22813545-22813754)
chr7 (9-131)||(22808225-22808347)
chr7 (9-142)||(22874522-22874655)
chr7 (9-142)||(22887892-22888025)
chr7 (9-142)||(22829625-22829758)
chr7 (9-142)||(22803930-22804063)
chr7 (9-142)||(22838646-22838779)
chr7 (9-142)||(22870428-22870561)
chr7 (18-64)||(22912331-22912377)
[»] chr1 (1 HSPs)
chr1 (18-112)||(21151996-21152090)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 22879364 - 22879155
Alignment:
Q  9 cagaacctgtggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagatttgtctttgcttagtttatcttcttctgg 108  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22879364 cagaacctttggctagaccaggtatgagacaagttgtgcagtatttggagagggatatacctttgccagatttgtctttgcctagtttatcttcttctgg 22879265  T
Q  109 tttaacttttgggtaccaagaattttttgaggactttcctttgtcttatccttcttctatggacaagaaaatgtcgcatacgtctgtgtctattgctgat 208  Q
     |||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22879264 attaacttttgggaacaaatatttttttgaggactttcctttgtcttatccttcttctatggacaagaaaatgtcgcatacgtctgtgtctcttgctgat 22879165  T
Q  209 tcacttctct 218  Q
    ||||||||||    
T  22879164 tcacttctct 22879155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 22896996 - 22896787
Alignment:
Q  9 cagaacctgtggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagatttgtctttgcttagtttatcttcttctgg 108  Q
    |||||||| ||||||||||| |||||||||||||||| | ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22896996 cagaacctttggctagaccaggtatgagacaagttgtacagtatttggaaagggatatacctttaccagatttgtctttgcttagtttatcttcttctgg 22896897  T
Q  109 tttaacttttgggtaccaagaattttttgaggactttcctttgtcttatccttcttctatggacaagaaaatgtcgcatacgtctgtgtctattgctgat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| || || ||||||||||||||||||    
T  22896896 tttaacttttgggtaccaagaattttttgaggactttcctttgtcttatccttcttctatgggcaacacaatgtcacacacctctgtgtctattgctgat 22896797  T
Q  209 tcacttctct 218  Q
    ||||||||||    
T  22896796 tcacttctct 22896787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 22892680 - 22892471
Alignment:
Q  9 cagaacctgtggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagatttgtctttgcttagtttatcttcttctgg 108  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22892680 cagaacctttggctagaccatgtatgagacaagttgtgcagtatttggagagggatatacctttgccagatttgtctttgcttagtttatcttcttctgg 22892581  T
Q  109 tttaacttttgggtaccaagaattttttgaggactttcctttgtcttatccttcttctatggacaagaaaatgtcgcatacgtctgtgtctattgctgat 208  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |||||| || || |||||||||||||| ||     
T  22892580 attaacttttgggtaccaagaattttttgaggactttcctttgtcttatccttcctctatgggcaacacaatgtcacagacttctgtgtctattgccgac 22892481  T
Q  209 tcacttctct 218  Q
    ||| ||||||    
T  22892480 tcaattctct 22892471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 22813754 - 22813545
Alignment:
Q  9 cagaacctgtggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagatttgtctttgcttagtttatcttcttctgg 108  Q
    |||||||| ||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  22813754 cagaacctttggctagaccaggtatgagacaagttgtgcagtatttggagcgggatatacctttgccagatttgccttcgcttagtttatcttcttctgg 22813655  T
Q  109 tttaacttttgggtaccaagaattttttgaggactttcctttgtcttatccttcttctatggacaagaaaatgtcgcatacgtctgtgtctattgctgat 208  Q
     |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||||| ||||| ||||| |||||| |||||    
T  22813654 attaacttttgggtaccaagaatattttgaggactttcctttgtcgtatccttcttccatggacaagacaatgtcacatacttctgtttctatttctgat 22813555  T
Q  209 tcacttctct 218  Q
    ||||||||||    
T  22813554 tcacttctct 22813545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 22808347 - 22808225
Alignment:
Q  9 cagaacctgtggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagatttgtctttgcttagtttatcttcttctgg 108  Q
    |||| ||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  22808347 cagagcctctggttagaccaagtatgagacaagttgtgcagtatttggagagggatatagctttgccagatttgtcttcgcttagtttatcttcttctgg 22808248  T
Q  109 tttaacttttgggtaccaagaat 131  Q
    |||||||||||||||||||||||    
T  22808247 tttaacttttgggtaccaagaat 22808225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 22874655 - 22874522
Alignment:
Q  9 cagaacctgtggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagatttgtctttgcttagtttatcttcttctgg 108  Q
    |||| ||| ||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||    
T  22874655 cagagcctttggctagaccaagcatgaggcaagttgtgcagtatttggagagggatatacctttgccagatttttcttcgcttagtttatcttcttttgg 22874556  T
Q  109 tttaacttttgggtaccaagaattttttgaggac 142  Q
    ||||||||||||||||||||||| | ||||||||    
T  22874555 tttaacttttgggtaccaagaatgtgttgaggac 22874522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 22888025 - 22887892
Alignment:
Q  9 cagaacctgtggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagatttgtctttgcttagtttatcttcttctgg 108  Q
    |||| ||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  22888025 cagagcctttggctagaccaagtatgagacaagttgtacagtatttggagagggatacacctttgccagatttttcttcgcttagtttatcttcttctgg 22887926  T
Q  109 tttaacttttgggtaccaagaattttttgaggac 142  Q
    |||||||||||||||||||  |||| ||||||||    
T  22887925 tttaacttttgggtaccaattatttgttgaggac 22887892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 22829758 - 22829625
Alignment:
Q  9 cagaacctgtggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagatttgtctttgcttagtttatcttcttctgg 108  Q
    |||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||    
T  22829758 cagaacctttggctagaccaggtatgagacaagttgtgcagtatttggagagggatatacctttgccatatttgttttcgcttagtttatcttcttctgg 22829659  T
Q  109 tttaacttttgggtaccaagaattttttgaggac 142  Q
    ||||  |||||||||||||| || | ||||||||    
T  22829658 tttattttttgggtaccaagtatctgttgaggac 22829625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 22804063 - 22803930
Alignment:
Q  9 cagaacctgtggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagatttgtctttgcttagtttatcttcttctgg 108  Q
    |||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| | |||    
T  22804063 cagagcctttggctagaccaagtatgagacaagttgtgcagtatttggagagggatttacctttaccagatttgtcattgcttagtttatcttcctatgg 22803964  T
Q  109 tttaacttttgggtaccaagaattttttgaggac 142  Q
     |||||||||||| |||||||| || ||||||||    
T  22803963 attaacttttgggcaccaagaacttgttgaggac 22803930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 22838779 - 22838646
Alignment:
Q  9 cagaacctgtggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagatttgtctttgcttagtttatcttcttctgg 108  Q
    |||| ||| ||||||||||||||||||| |||||||||| ||||||||||| ||||||||| || ||||||||||||| ||||||||||||| ||| |||    
T  22838779 cagagcctttggctagaccaagtatgaggcaagttgtgcagtatttggagacggatataccctttccagatttgtcttcgcttagtttatctacttttgg 22838680  T
Q  109 tttaacttttgggtaccaagaattttttgaggac 142  Q
    ||||||||||||||||||||||| | ||||||||    
T  22838679 tttaacttttgggtaccaagaatgtgttgaggac 22838646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 22870561 - 22870428
Alignment:
Q  9 cagaacctgtggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagatttgtctttgcttagtttatcttcttctgg 108  Q
    |||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | |||    
T  22870561 cagagcctttggctagaccaagtatgagacaagttgtgcagtatttggagagggatatacctttaccagctttgtcattgcttagtttatcttcctatgg 22870462  T
Q  109 tttaacttttgggtaccaagaattttttgaggac 142  Q
     |||||||||||| |||||||| || ||||||||    
T  22870461 attaacttttgggcaccaagaacttgttgaggac 22870428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 22912377 - 22912331
Alignment:
Q  18 tggctagaccaagtatgagacaagttgtgctgtatttggagagggat 64  Q
    |||||||||||||||||||||||||| ||  ||||||||||||||||    
T  22912377 tggctagaccaagtatgagacaagttttgaggtatttggagagggat 22912331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 21151996 - 21152090
Alignment:
Q  18 tggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagatttgtctttgcttagtttatcttcttctggttta 112  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  21151996 tggctagaccaagtatgaggcaagttgtgcagtatttggagagggatatacctttgccagatttgtcttcacttagtttatcttcttctggttta 21152090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University