View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17993_high_2 (Length: 514)
Name: NF17993_high_2
Description: NF17993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17993_high_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 56 - 499
Target Start/End: Original strand, 30291792 - 30292235
Alignment:
| Q |
56 |
ccaacaggtgcaaaggtacagggctaggttgtctccaggtgatgtttatgtaattccagcaggttatccaaatgtcgtaaaagcttcgtcggatctctct |
155 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30291792 |
ccaacaagtgcaaaggtacagggctaggttgactccaggtgatgtttatgtaattccagcaggttatccaaatgtcgtaaaagcttcgtcggatctctct |
30291891 |
T |
|
| Q |
156 |
ttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctggtatactgtattctcactcagtctctttctgtatggcctaattacaat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30291892 |
ttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctggtatactgtattctcactcagtctctttctgtatggcctaattacaat |
30291991 |
T |
|
| Q |
256 |
agtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaannnnnnnnnnnnaatgacatgttaacattaattaaaagatttgcttctactt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30291992 |
agtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaattttttatttttaatgacatgttaacattaattaaaagatttgcttctactt |
30292091 |
T |
|
| Q |
356 |
aattgaataagaaaaagctaattaagatatgtttattttttgtgtgattggaaatttgaaggtgaggaggacaatgtgataagccaaatagagagaccag |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
30292092 |
aattgaataagaaaaagctaattaagatatgtttattttttgtgtgattggaaatttgaaggtgaggaggacaatgtgataagccaaattcagagaccag |
30292191 |
T |
|
| Q |
456 |
tgaaagaggtagcattccctggatcagctcaagatgttgagagt |
499 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
30292192 |
tgaaagagctagcattccctggatcagctcaagatgttgagagt |
30292235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 56 - 499
Target Start/End: Original strand, 30304426 - 30304869
Alignment:
| Q |
56 |
ccaacaggtgcaaaggtacagggctaggttgtctccaggtgatgtttatgtaattccagcaggttatccaaatgtcgtaaaagcttcgtcggatctctct |
155 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30304426 |
ccaacaagtgcaaaggtacagggctaggttgactccaggtgatgtttatgtaattccagcaggttatccaaatgtcgtaaaagcttcgtcggatctctct |
30304525 |
T |
|
| Q |
156 |
ttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctggtatactgtattctcactcagtctctttctgtatggcctaattacaat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30304526 |
ttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctggtatactgtattctcactcagtctctttctgtatggcctaattacaat |
30304625 |
T |
|
| Q |
256 |
agtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaannnnnnnnnnnnaatgacatgttaacattaattaaaagatttgcttctactt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30304626 |
agtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaattttttatttttaatgacatgttaacattaattaaaagatttgcttctactt |
30304725 |
T |
|
| Q |
356 |
aattgaataagaaaaagctaattaagatatgtttattttttgtgtgattggaaatttgaaggtgaggaggacaatgtgataagccaaatagagagaccag |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
30304726 |
aattgaataagaaaaagctaattaagatatgtttattttttgtgtgattggaaatttgaaggtgaggaggacaatgtgataagccaaattcagagaccag |
30304825 |
T |
|
| Q |
456 |
tgaaagaggtagcattccctggatcagctcaagatgttgagagt |
499 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30304826 |
tgaaagagctagcattccctggatcagctcaagatgttgagagt |
30304869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 56 - 499
Target Start/End: Original strand, 30286758 - 30287201
Alignment:
| Q |
56 |
ccaacaggtgcaaaggtacagggctaggttgtctccaggtgatgtttatgtaattccagcaggttatccaaatgtcgtaaaagcttcgtcggatctctct |
155 |
Q |
| |
|
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||| ||||| |||||||||||| |
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|
| T |
30286758 |
ccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattccggcaggtcatccaattgtcgtaactgcttcttcggatctctct |
30286857 |
T |
|
| Q |
156 |
ttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctggtatactgtattctcactcagtctctttctgtatggcctaattacaat |
255 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30286858 |
ttgcttggatttggtatcaatgcggagaacaatcaaaggaacttccttgctggtatactgtattctcactcagtctctttctgtatggcctaattacaat |
30286957 |
T |
|
| Q |
256 |
agtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaannnnnnnnnnnnaatgacatgttaacattaattaaaagatttgcttctactt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30286958 |
agtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaattttttatttttaatgacatgttaacattaattaaaagatttgcttctactt |
30287057 |
T |
|
| Q |
356 |
aattgaataagaaaaagctaattaagatatgtttattttttgtgtgattggaaatttgaaggtgaggaggacaatgtgataagccaaatagagagaccag |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287058 |
aattgaataagaaaaagctaattaagatatgtttattttttgtgtgattggaaatttgaaggtgaggaggacaatgtgataagccaaatagagagaccag |
30287157 |
T |
|
| Q |
456 |
tgaaagaggtagcattccctggatcagctcaagatgttgagagt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287158 |
tgaaagaggtagcattccctggatcagctcaagatgttgagagt |
30287201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 56 - 362
Target Start/End: Original strand, 30315339 - 30315651
Alignment:
| Q |
56 |
ccaacaggtgcaaaggtacagggctaggttgtctccaggtgatgtttatgtaattccagcaggttatccaaatgtcgtaaaagcttcgtcggatctctct |
155 |
Q |
| |
|
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| ||||| |||||||||||| |
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|
| T |
30315339 |
ccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattcccgcaggtcatccaattgtcgtaaaggcttcctcggatctctct |
30315438 |
T |
|
| Q |
156 |
ttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctgg--tatactgtattctcactcagtctct----ttctgtatggcctaat |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| ||||||||||| |||||| |||||||||||||||| |
|
|
| T |
30315439 |
ttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtatatactatattctcactcggtctctttccttctgtatggcctaat |
30315538 |
T |
|
| Q |
250 |
tacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaannnnnnnnnnnnaatgacatgttaacattaattaaaagatttgctt |
349 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||| |||||| ||||| || |
|
|
| T |
30315539 |
tacaatagttttctaccaaaattaaattaaattgaatgtagcctatattagttattttttatttttaatgacatgttaacattatttaaaatatttggtt |
30315638 |
T |
|
| Q |
350 |
ctacttaattgaa |
362 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30315639 |
ctacttaattgaa |
30315651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 351 - 499
Target Start/End: Original strand, 30299930 - 30300077
Alignment:
| Q |
351 |
tacttaattgaataagaaaaagctaattaagatatgtttattttttgtgtgattggaaatttgaaggtgaggaggacaatgtgataagccaaatagagag |
450 |
Q |
| |
|
||||||| ||||| || |||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
30299930 |
tacttaaatgaatgagtaaaatctaattaagatatgtttatttt-tgtgtgatttcaaatttgaaggtgaggaagacaatgtgataagccaaatagagag |
30300028 |
T |
|
| Q |
451 |
accagtgaaagaggtagcattccctggatcagctcaagatgttgagagt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30300029 |
accagtgaaagaggtagcattccctggatcagctcaagatgttgagagt |
30300077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 56 - 210
Target Start/End: Original strand, 30299216 - 30299370
Alignment:
| Q |
56 |
ccaacaggtgcaaaggtacagggctaggttgtctccaggtgatgtttatgtaattccagcaggttatccaaatgtcgtaaaagcttcgtcggatctctct |
155 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||||| |||||| | ||||| |||||||||||| |
|
|
| T |
30299216 |
ccaacaagtgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaactgtcgttagcgcttcctcggatctctct |
30299315 |
T |
|
| Q |
156 |
ttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctggta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| |
|
|
| T |
30299316 |
ttgcttggatttggtatcaatgctgagaacaacgagaggaacttccttgcaggta |
30299370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 411 - 499
Target Start/End: Original strand, 30315647 - 30315735
Alignment:
| Q |
411 |
ttgaaggtgaggaggacaatgtgataagccaaatagagagaccagtgaaagaggtagcattccctggatcagctcaagatgttgagagt |
499 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30315647 |
ttgaaggtgaggaagacaatgtgataagccaaatagagagaccagtgaaagaggtagcattccctggatcagctcaagatgttgagagt |
30315735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 414 - 495
Target Start/End: Original strand, 46810441 - 46810522
Alignment:
| Q |
414 |
aaggtgaggaggacaatgtgataagccaaatagagagaccagtgaaagaggtagcattccctggatcagctcaagatgttga |
495 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| || ||||| |||||||| |||||||||||||| ||| |||| ||||| |
|
|
| T |
46810441 |
aaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagaggttgcattccctggatctgctgaagaggttga |
46810522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 46810184 - 46810335
Alignment:
| Q |
63 |
gtgcaaaggtacagggctaggttgtctccaggtgatgtttatgtaattccagcaggttatccaaatgtcgtaaaagcttcgtcggatctctctttgcttg |
162 |
Q |
| |
|
||||| ||||||| |||||| |||||||||| || ||| | ||||||| |||||| | ||| | | |||| ||||| ||| ||||| ||| |||| |
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|
| T |
46810184 |
gtgcagaggtacaacgctaggctgtctccaggcgacgttgttataattccggcaggtcacccagtagccataaatgcttcctcgaatctcaatttccttg |
46810283 |
T |
|
| Q |
163 |
gatttggtatcaatgctgagaacaaccagaggagcttccttgctggtatact |
214 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| | ||| ||||| |||||||| |
|
|
| T |
46810284 |
gctttggtatcaatgctgagaacaatcagagaaactttcttgcaggtatact |
46810335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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