View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17993_high_4 (Length: 389)
Name: NF17993_high_4
Description: NF17993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17993_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Original strand, 7766680 - 7767047
Alignment:
| Q |
17 |
ttaaggaccgcactggcgcactgcaccttgattctgcacttcttgagtgagaatgtcttcaaaaagagtgataatgttaaattcaaagaatctccgtgaa |
116 |
Q |
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| T |
7766680 |
ttaaggaccgcactggcgcactgcaccttgattctgcacttcttgagtgagaatgtcttcaaaaagagtgataatgttaaattcaaagaatctccgtgaa |
7766779 |
T |
|
| Q |
117 |
tctggtggatcagagaatgattctgtacaggagttggaagattatgctgttcacaaggctgaggagactacgaaatcggtccagaattgtttaaagatag |
216 |
Q |
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| T |
7766780 |
tctggtggatcagagaatgattctgtacaggagttggaagattatgctgttcacaaggctgaggagactacgaaatcggtccagaattgtttaaagatag |
7766879 |
T |
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| Q |
217 |
cagagaacataagagagaatgctaccaagacatttgtcacccttcatcaccagggtgagcaaattactaggactcaccatgtcaccgcggacattgatgg |
316 |
Q |
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| T |
7766880 |
cagagaacataagagagaatgctaccaagacatttgtcacccttcatcaccagggtgagcaaattactaggactcaccatgtcgccgcggacattgatgg |
7766979 |
T |
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| Q |
317 |
acatttaagtcgggtataatcttcttaatatacannnnnnnncaagtgcttctatatggtgcttcttc |
384 |
Q |
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| T |
7766980 |
acatttaagtcgggtataatcttcttaatatacattttttttcaagtgcttctatacggtgcttcttc |
7767047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 144 - 350
Target Start/End: Complemental strand, 45392712 - 45392506
Alignment:
| Q |
144 |
caggagttggaagattatgctgttcacaaggctgaggagactacgaaatcggtccagaattgtttaaagatagcagagaacataagagagaatgctacca |
243 |
Q |
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| T |
45392712 |
caggagttggagaattatgctgtttacaaggctgaggagactaccaaatcggtacacaattgtttgaagatagcagagaacataagagaggatgctgcca |
45392613 |
T |
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| Q |
244 |
agacatttgtcacccttcatcaccagggtgagcaaattactaggactcaccatgtcaccgcggacattgatggacatttaagtcgggtataatcttctta |
343 |
Q |
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| T |
45392612 |
agacattggtcacccttcatcaccagggtgagcaaattactaggagtcaccatgtcgccaccgacattgatcgagatttaagtcgggtataatcttctta |
45392513 |
T |
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| Q |
344 |
atataca |
350 |
Q |
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||||||| |
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| T |
45392512 |
atataca |
45392506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 293
Target Start/End: Complemental strand, 7216769 - 7216621
Alignment:
| Q |
145 |
aggagttggaagattatgctgttcacaaggctgaggagactacgaaatcggtccagaattgtttaaagatagcagagaacataagagagaatgctaccaa |
244 |
Q |
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|||| ||||| || ||||||||| |||| ||||| ||||| || |||||||| | |||||| |||||||||||| | || |||| |||||||||| |
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| T |
7216769 |
aggatttggaggagtatgctgtttacaaagctgaagagacgacaaaatcggtaaacaattgtcggaagatagcagaggaaatgcgagaagatgctaccaa |
7216670 |
T |
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| Q |
245 |
gacatttgtcacccttcatcaccagggtgagcaaattactaggactcac |
293 |
Q |
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| T |
7216669 |
gactttggtcatgctgcatcatcagggcgagcagattactaggagtcac |
7216621 |
T |
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