View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17993_high_5 (Length: 334)

Name: NF17993_high_5
Description: NF17993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17993_high_5
NF17993_high_5
[»] chr1 (11 HSPs)
chr1 (19-334)||(9299642-9299957)
chr1 (19-261)||(9257753-9257994)
chr1 (30-274)||(9466989-9467233)
chr1 (41-209)||(9364070-9364238)
chr1 (41-209)||(9337211-9337379)
chr1 (41-209)||(9242806-9242974)
chr1 (20-174)||(8962012-8962166)
chr1 (30-174)||(8939085-8939229)
chr1 (31-174)||(8926659-8926802)
chr1 (41-135)||(9438035-9438129)
chr1 (41-135)||(9420952-9421046)
[»] chr3 (1 HSPs)
chr3 (19-284)||(9171095-9171360)
[»] scaffold0690 (1 HSPs)
scaffold0690 (41-201)||(1287-1447)
[»] chr6 (1 HSPs)
chr6 (41-201)||(15910659-15910819)


Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 9299957 - 9299642
Alignment:
Q  19 aacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9299957 aacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatg 9299858  T
Q  119 tcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatcttgaaatgacgatgaa 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9299857 tcagcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatcttgaaatggcgatgaa 9299758  T
Q  219 ttcgaataatagcaccgagcataagcactagcaaagttgaaccgattattacacctgtaaatttaatatttaaaatatccttaatagttctcagaaaaat 318  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9299757 ttcgaataatagcaccgagcataagcactagcaaagttaaaccgattattacacctgtaaatttaatatttaaaatatccttaacagttctcagaaaaat 9299658  T
Q  319 atacgaaaatggaaat 334  Q
    ||||||||||||||||    
T  9299657 atacgaaaatggaaat 9299642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 9257753 - 9257994
Alignment:
Q  19 aacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatg 118  Q
    |||||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9257753 aacagcaactagaatttgacttgataattg-cctttgtaaacagctccttgagctccttctccgatcttatccttaaatttgtttgtaattctcttgatg 9257851  T
Q  119 tcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatcttgaaatgacgatgaa 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9257852 tcagcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatcttgaaatggcgatgaa 9257951  T
Q  219 ttcgaataatagcaccgagcataagcactagcaaagttgaacc 261  Q
    |||||| ||||||||| || | ||||||||| |||||||||||    
T  9257952 ttcgaacaatagcaccaagtacaagcactagtaaagttgaacc 9257994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 30 - 274
Target Start/End: Original strand, 9466989 - 9467233
Alignment:
Q  30 gaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcatagga 129  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9466989 gaatttggcttgacaatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcatagga 9467088  T
Q  130 gaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatcttgaaatgacgatgaattcgaataata 229  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||| |||||||| |||     
T  9467089 gaatctggttggctttaaagccttataatccttcaaaaagttttcgattcttacatgatcttcgcctttcatcttgaaatagcgataaattcgaacaatg 9467188  T
Q  230 gcaccgagcataagcactagcaaagttgaaccgattattacacct 274  Q
    |  ||||| | ||| | |||||||||||||||||| ||| |||||    
T  9467189 gtgccgagaacaagtaatagcaaagttgaaccgatgattccacct 9467233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 41 - 209
Target Start/End: Complemental strand, 9364238 - 9364070
Alignment:
Q  41 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttg 140  Q
    ||||| |||||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||||||||||||||| ||| ||||| ||||| || ||||    
T  9364238 gataacttacctttataaacagctccatgagccccttcgcctatcttatctttaaatttatttgtaattctctttaagtctgcataagagaacctagttg 9364139  T
Q  141 gctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatcttgaaat 209  Q
    |||||||||||   |||||||||||||||||||| ||||||  ||||||||||| ||||||||| ||||    
T  9364138 gctttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcgcttttcatcttaaaat 9364070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 41 - 209
Target Start/End: Complemental strand, 9337379 - 9337211
Alignment:
Q  41 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttg 140  Q
    ||||| |||||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||||||||||||||| ||| ||||| ||||| || ||||    
T  9337379 gataacttacctttataaacagctccatgagccccttcgcctatcttatctttaaatttatttgtaattctctttaagtctgcataagagaacctagttg 9337280  T
Q  141 gctttaaagc-ctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatcttgaaat 209  Q
    |||||||||| ||| |||||||||||||||||||| ||||||  ||||||||||| ||||||||| ||||    
T  9337279 gctttaaagcactg-taatccttcaaaaagttttcaattcttgtatgatcttcgcttttcatcttaaaat 9337211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 9242806 - 9242974
Alignment:
Q  41 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttg 140  Q
    |||||||||||||| ||||||||||||||||  ||||| || |||||||| | |||||| |||||||||||||||||||| ||||| ||||| || ||||    
T  9242806 gataatttacctttataaacagctccatgagtcccttcgcctatcttatcttcaaatttatttgtaattctctttatgtctgcataagagaacctagttg 9242905  T
Q  141 gctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatcttgaaat 209  Q
    |||||||||||   |||||||||||||||||||| ||||||  ||||||||| | ||||||||| ||||    
T  9242906 gctttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcacttttcatcttaaaat 9242974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 8962166 - 8962012
Alignment:
Q  20 acagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgt 119  Q
    ||||||||  |||||||||| ||||||||||||||||| |||||||||||||||||||| || | ||| ||||| ||||  |  ||||||||||| || |    
T  8962166 acagcaacaagaatttgactcgataatttacctttgtagacagctccatgagctccttcgcccagcttttccttgaattgatcagtaattctcttgatat 8962067  T
Q  120 cagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttc 174  Q
    | ||||| || ||||| ||||||||| | || | |||||||||||||||||||||    
T  8962066 cggcataagaaaatctagttggctttgacgcttcataatccttcaaaaagttttc 8962012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 8939229 - 8939085
Alignment:
Q  30 gaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcatagga 129  Q
    |||||||||| |||||||||||||| || |||||||||||||||||||| || | ||| || || ||||  | |||||||||||| || || ||||| ||    
T  8939229 gaatttgactcgataatttacctttatagacagctccatgagctccttcccctagcttttctttgaattgatctgtaattctcttgatatctgcataaga 8939130  T
Q  130 gaatctggttggctttaaagcctgataatccttcaaaaagttttc 174  Q
     ||||| ||||||||| | || |  ||||||||||||||||||||    
T  8939129 aaatcttgttggctttgacgcttcgtaatccttcaaaaagttttc 8939085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 174
Target Start/End: Complemental strand, 8926802 - 8926659
Alignment:
Q  31 aatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggag 130  Q
    ||||||| | |||||||||||||| || |||||||||||||||||||| || | ||| || || || |  |  ||||||||||| || || ||||| ||     
T  8926802 aatttgattcgataatttacctttatagacagctccatgagctccttcgcctagcttttctttgaactgatccgtaattctcttgatatctgcataagaa 8926703  T
Q  131 aatctggttggctttaaagcctgataatccttcaaaaagttttc 174  Q
    ||||| ||||||||| | || | |||||||||||||||||||||    
T  8926702 aatctagttggctttgacgcttcataatccttcaaaaagttttc 8926659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 9438035 - 9438129
Alignment:
Q  41 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatct 135  Q
    ||||||||||||||| |||| || |||||||||||||| || | ||  ||| |||| || |||||||| |||||||| |||||||| ||||||||    
T  9438035 gataatttacctttgaaaactgcaccatgagctccttcacctaactcttccctaaaattatttgtaatcctctttatatcagcataagagaatct 9438129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 9420952 - 9421046
Alignment:
Q  41 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatct 135  Q
    ||||||||||||||| |||| || |||||||||||||| || | ||  ||| |||| || |||||||| |||||||| ||| |||| ||||||||    
T  9420952 gataatttacctttgaaaactgcaccatgagctccttcacctaactcttccctaaaattatttgtaatcctctttatatcaacataagagaatct 9421046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 9171360 - 9171095
Alignment:
Q  19 aacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatg 118  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||| ||||| ||||||||||||    
T  9171360 aacaccaactagaatttggcttgataatttacctttgtaaacagctccatgagctccttcgcctaacttatccttaaatttatttgtgattctctttatg 9171261  T
Q  119 tcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatcttgaaatgacgatgaa 218  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |    
T  9171260 tcagcataggagaatctggttggctttaaagccttgtaatccttcaaaaagttttcgattcttttatgatcttcgcctttcatcttgaaatgatgatgga 9171161  T
Q  219 ttcgaataatagcaccgagcataagcactagcaaagttgaaccgattattacacctgtaaatttaa 284  Q
     | ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||    
T  9171160 cttgaacaatagcaccgagcacaagcactagcaaagttgaaccaattattacacctgcaaatttaa 9171095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 1447 - 1287
Alignment:
Q  41 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttg 140  Q
    |||||||||||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||||||||||||| | ||| ||||| ||||| || ||||    
T  1447 gataatttacctttataaacagctccatgagccccttcccctatcttatctttaaatttatttgtaattctcttcaagtctgcataagagaacctagttg 1348  T
Q  141 gctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcat 201  Q
    |||||||||||   |||||||||||||||||||| ||||||  ||||||||||||||||||    
T  1347 gctttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcgcctttcat 1287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 41 - 201
Target Start/End: Original strand, 15910659 - 15910819
Alignment:
Q  41 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttg 140  Q
    |||||||||||||| ||||||||||||||||| ||||| || |||||||| |||||||| ||||||| |||||| | ||| ||||| ||||| || ||||    
T  15910659 gataatttacctttataaacagctccatgagccccttcccctatcttatctttaaatttatttgtaaatctcttcaagtctgcataagagaacctagttg 15910758  T
Q  141 gctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcat 201  Q
    |||||||||||   |||||||||||||||||||| ||||||  ||||||||||||||||||    
T  15910759 gctttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcgcctttcat 15910819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University