View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17993_high_7 (Length: 308)

Name: NF17993_high_7
Description: NF17993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17993_high_7
NF17993_high_7
[»] chr2 (1 HSPs)
chr2 (1-295)||(35831228-35831522)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 35831228 - 35831522
Alignment:
Q  1 aagagtttgttattgtaatattttgtttgagaagtttgatgaaaaatgaaaaacatataactggtaacagagtcaaaactacgcttaaaatgcccaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35831228 aagagtttgttattgtaatattttgtttgagaagtttgatgaaaaatgaaaaacatataactggtaacagagtcaaaactacgcttaaaatgcccaaatc 35831327  T
Q  101 ttctacttatgtaaaaactcgcatctttcccatannnnnnnncctctctttgaaaccttccctttgcaattgtaatcaagtcggaaataggtttaatggt 200  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35831328 ttctacttatgtaaaaactcgcatctttcccattttttttttcctctctttgaaaccttccctttgcaattgtaatcaagtcggaaataggtttaatggt 35831427  T
Q  201 tcgggtgatatatctagagaattcaaggttgtgaattgtcgcttggtgttaacaacacattccctttttgtttttgtttatggagttgaagttga 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35831428 tcgggtgatatatctagagaattcaaggttgtgaattgtcgcttggtgttaacaacacattccctttttgtttttgtttatggagttgaagttga 35831522  T

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