View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17993_low_10 (Length: 275)
Name: NF17993_low_10
Description: NF17993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17993_low_10 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 275
Target Start/End: Complemental strand, 40605356 - 40605087
Alignment:
| Q |
6 |
aggagcacagatattttctgataacagttgtcattgttagtttgtgattatttgaaagaaatccaagggtgaggggtaaagggcatagaccagatagaga |
105 |
Q |
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| T |
40605356 |
aggaacacagatattttctgataacagttgtcattgttagtttgtgattatttgaaagaaatccaagggtgaggggtaaagggcataggccagatagaga |
40605257 |
T |
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| Q |
106 |
gcatactctgaaggcagcatattgaactgattaagagacagaaaatgagtgcaagatgttttatatatagagcttgtggccaatatccattaaagaacaa |
205 |
Q |
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| T |
40605256 |
gcatactctgaaggcagcaaattgaactgattaacagacagaaaatgagtgcaagatgttttatatatagagcttgtggccaatatccattaaagaacaa |
40605157 |
T |
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| Q |
206 |
tctgatgctgtaaaactatcactgtgatagggtgcaggaaaggattggatccatggtgaatctactgtat |
275 |
Q |
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| T |
40605156 |
tctgatgctgtaaaactatcactgtgatagggtgcagcaaaggattggatccatggtgaatctactgtat |
40605087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 180
Target Start/End: Complemental strand, 40604251 - 40604093
Alignment:
| Q |
30 |
cagttgtcattgttagtttgtgattatttgaaagaaatccaagggtgaggggtaaagggcatagacc------agatagagagcatactctgaaggcagc |
123 |
Q |
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| T |
40604251 |
cagttgtcattgttagtttaggaacagttgtgagaaatccaagggtgtggggtaaaggtcataggcatggtataggtagagagtatactccgaaggcaac |
40604152 |
T |
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| Q |
124 |
atattgaactgattaagaga--cagaaaatgagtgcaagatgttttatatatagagctt |
180 |
Q |
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| T |
40604151 |
atattgaattgagtaaaagatgcataaaatgagtacaagatgttttatatatagagctt |
40604093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 40604018 - 40603963
Alignment:
| Q |
204 |
aatctgatgctgtaaaactatcactgtgatagggtgcaggaaaggattggatccat |
259 |
Q |
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| T |
40604018 |
aatctgatactgtaaaactatcactgtgataggatgcatgaaaggattggatccat |
40603963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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