View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17993_low_19 (Length: 204)
Name: NF17993_low_19
Description: NF17993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17993_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 8033007 - 8033117
Alignment:
| Q |
26 |
ggtaaagcaataacaataaacttgggtttgcaagtgaaaataaaaaatttaagttgtaaattaacatgaaaatagcactatagcaggactacatgtacaa |
125 |
Q |
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| T |
8033007 |
ggtaaagcaataacaataaacttgggtttgcaagtgaaaataaaaaatttaagttgtaaattaacaggaaaatagcactatagcaggactacatgtacaa |
8033106 |
T |
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| Q |
126 |
ctagttaaagt |
136 |
Q |
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| T |
8033107 |
ctagttaaagt |
8033117 |
T |
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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 8033199 - 8033250
Alignment:
| Q |
137 |
actctgatccctcaaatacttatgtgtaagtttcactaattatttgtcattt |
188 |
Q |
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||||||||||||||||||||||||||||||||| | || ||||||||||||| |
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| T |
8033199 |
actctgatccctcaaatacttatgtgtaagttttaatagttatttgtcattt |
8033250 |
T |
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